RNA–Protein interactions for RNA: ENST00000560679.1

TPM1-225, Transcript of tropomyosin 1, humanhuman

TSL 3

Gene TPM1, Length 292 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-225ENST00000560679 PTCH2Q9Y6C5 1203 aa12.8□□□□□ -0.36
TPM1-225ENST00000560679 LAMA3Q16787 3333 aa12.8□□□□□ -0.36
TPM1-225ENST00000560679 ARAP2Q8WZ64 1704 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 COL6A3P12111 3177 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 SPDYE2BA6NHP3 402 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 H0YGN5 161 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 SNAP23O00161 211 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 PPP1R12BO60237 982 aaPredicted RBP12.79□□□□□ -0.36
TPM1-225ENST00000560679 SPDYE6P0CI01 402 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 DLGAP5Q15398 846 aa12.79□□□□□ -0.36
TPM1-225ENST00000560679 CWF19L2Q2TBE0 894 aaKnown RBP12.79□□□□□ -0.36
TPM1-225ENST00000560679 USP2O75604 605 aaPredicted RBP12.78□□□□□ -0.36
TPM1-225ENST00000560679 RALBP1Q15311 655 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 CFAP100Q494V2 611 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 CDAN1Q8IWY9 1227 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 C8orf58Q8NAV2 365 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 CNKSR2Q8WXI2 1034 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 MS4A4AQ96JQ5 239 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 PRMT6Q96LA8 375 aaPredicted RBP12.78□□□□□ -0.36
TPM1-225ENST00000560679 CD209Q9NNX6 404 aa12.78□□□□□ -0.36
TPM1-225ENST00000560679 PI4KAP2A4QPH2 592 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 NEURL1BA8MQ27 555 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 DDX58O95786 925 aaKnown RBP12.77□□□□□ -0.37
TPM1-225ENST00000560679 ITGA6P23229 1130 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 IGHMBP2P38935 993 aaKnown RBP12.77□□□□□ -0.37
TPM1-225ENST00000560679 SLC9C1Q4G0N8 1177 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 UBE3BQ7Z3V4 1068 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 PI4KAP1Q8N8J0 262 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 BRI3BPQ8WY22 251 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 OPTNQ96CV9 577 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 ELP3Q9H9T3 547 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 VEZTQ9HBM0 779 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 IFT57Q9NWB7 429 aa12.77□□□□□ -0.37
TPM1-225ENST00000560679 F8W031 263 aaPredicted RBP12.76□□□□□ -0.37
TPM1-225ENST00000560679 IREB2P48200 963 aaKnown RBP12.76□□□□□ -0.37
TPM1-225ENST00000560679 CASP7P55210 303 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 CHRNDQ07001 517 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 RASA3Q14644 834 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 SUPT20HL1Q3ZLR7 823 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 OTUD7BQ6GQQ9 843 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 KSR2Q6VAB6 950 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 ANKRD13AQ8IZ07 590 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 SHISA4Q96DD7 197 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 TMEM106CQ9BVX2 250 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 PLA2G12BQ9BX93 195 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 ANKRD2Q9GZV1 360 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 ADAMTS8Q9UP79 889 aa12.76□□□□□ -0.37
TPM1-225ENST00000560679 MYBBP1AQ9BQG0 1328 aaKnown RBP12.76□□□□□ -0.37
TPM1-225ENST00000560679 A0A0C4DFX4 3053 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 H7C1W4 665 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 MYCP01106 439 aaPredicted RBP12.75□□□□□ -0.37
TPM1-225ENST00000560679 CHRDL2Q6WN34 429 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.75□□□□□ -0.37
TPM1-225ENST00000560679 C15orf52Q6ZUT6 534 aaKnown RBP12.75□□□□□ -0.37
TPM1-225ENST00000560679 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 SH3TC2Q8TF17 1288 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 ARHGAP39Q9C0H5 1083 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 JAG2Q9Y219 1238 aa12.75□□□□□ -0.37
TPM1-225ENST00000560679 MYO1BO43795 1136 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 CSF1RP07333 972 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 IL1R1P14778 569 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 KCNJ4P48050 445 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 WDR43Q15061 677 aaKnown RBP eCLIP12.74□□□□□ -0.37
TPM1-225ENST00000560679 TAF1CQ15572 869 aaPredicted RBP12.74□□□□□ -0.37
TPM1-225ENST00000560679 SLC4A8Q2Y0W8 1093 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 CCDC30Q5VVM6 783 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 FAM43AQ8N2R8 423 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 TEPSINQ96N21 525 aa12.74□□□□□ -0.37
TPM1-225ENST00000560679 RBM27Q9P2N5 1060 aaKnown RBP12.74□□□□□ -0.37
TPM1-225ENST00000560679 CCL15-CCL14A0A0B4J2E2 113 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 TAF5LO75529 589 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 FKBP1AP62942 108 aaKnown RBP12.73□□□□□ -0.37
TPM1-225ENST00000560679 GNAI1P63096 354 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 VGLL4Q14135 290 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 CCL15Q16663 113 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 G2E3Q7L622 706 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 NBPF11Q86T75 865 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 HELBQ8NG08 1087 aaPredicted RBP12.73□□□□□ -0.37
TPM1-225ENST00000560679 MPHOSPH8Q99549 860 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 PRO3102Q9H379 93 aa12.73□□□□□ -0.37
TPM1-225ENST00000560679 NEXNQ0ZGT2 675 aa12.72□□□□□ -0.37
TPM1-225ENST00000560679 GCKRQ14397 625 aa12.72□□□□□ -0.37
TPM1-225ENST00000560679 SPDYE2Q495Y8 402 aa12.72□□□□□ -0.37
TPM1-225ENST00000560679 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.72□□□□□ -0.37
TPM1-225ENST00000560679 ZFYVE28Q9HCC9 887 aa12.72□□□□□ -0.37
TPM1-225ENST00000560679 LACTBP83111 547 aaPredicted RBP12.71□□□□□ -0.37
TPM1-225ENST00000560679 MTFR1Q15390 333 aa12.71□□□□□ -0.37
TPM1-225ENST00000560679 UBE2Q1Q7Z7E8 422 aa12.71□□□□□ -0.37
TPM1-225ENST00000560679 TMEM39BQ9GZU3 492 aa12.71□□□□□ -0.37
TPM1-225ENST00000560679 ZNF70Q9UC06 446 aaPredicted RBP12.71□□□□□ -0.37
TPM1-225ENST00000560679 CUL9Q8IWT3 2517 aa12.71□□□□□ -0.37
TPM1-225ENST00000560679 ZNF316A6NFI3 1004 aaPredicted RBP12.7□□□□□ -0.38
TPM1-225ENST00000560679 APAF1O14727 1248 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 TLR2O60603 784 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 CTGFP29279 349 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 GTF2A2P52657 109 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 RBM5P52756 815 aaKnown RBP eCLIP12.7□□□□□ -0.38
TPM1-225ENST00000560679 TNFAIP1Q13829 316 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 ZNF804AQ7Z570 1209 aa12.7□□□□□ -0.38
TPM1-225ENST00000560679 TDRD3Q9H7E2 651 aaKnown RBP12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms