RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 WTIPA6NIX2 430 aaPredicted RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 FZD9O00144 591 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 GLRX3O76003 335 aaKnown RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 TOMM70O94826 608 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 ATP5JP18859 108 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 MX1P20591 662 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 ARID4AP29374 1257 aaPredicted RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 PHKA1P46020 1223 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 APLP1P51693 650 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 FKBP1AP62942 108 aaKnown RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 STRIP1Q5VSL9 837 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 SPTY2D1Q68D10 685 aaPredicted RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 CIAPIN1Q6FI81 312 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 SLC51AQ86UW1 340 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 GTF3C3Q9Y5Q9 886 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 SCN9AQ15858 1988 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 PDS5AQ29RF7 1337 aaKnown RBP11.26□□□□□ -0.61
LDLR-210ENST00000559340 FAM205AQ6ZU69 1335 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 MYO3BQ8WXR4 1341 aa11.26□□□□□ -0.61
LDLR-210ENST00000559340 MYH7P12883 1935 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 KLRK1P26718 216 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 TTF1Q15361 905 aaPredicted RBP11.25□□□□□ -0.61
LDLR-210ENST00000559340 FBXW7Q969H0 707 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 STAP2Q9UGK3 403 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 SUGT1Q9Y2Z0 365 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.25□□□□□ -0.61
LDLR-210ENST00000559340 TIAM2Q8IVF5 1701 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 AOX1Q06278 1338 aa11.25□□□□□ -0.61
LDLR-210ENST00000559340 RPS12P25398 132 aaKnown RBP11.24□□□□□ -0.61
LDLR-210ENST00000559340 GTF2IP78347 998 aa11.24□□□□□ -0.61
LDLR-210ENST00000559340 CHAF1AQ13111 956 aaPredicted RBP11.24□□□□□ -0.61
LDLR-210ENST00000559340 LRRFIP1Q32MZ4 808 aaKnown RBP11.24□□□□□ -0.61
LDLR-210ENST00000559340 C16orf71Q8IYS4 520 aaPredicted RBP11.24□□□□□ -0.61
LDLR-210ENST00000559340 SPATA5Q8NB90 893 aa11.24□□□□□ -0.61
LDLR-210ENST00000559340 RAD17O75943 681 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 VIL1P09327 827 aaKnown RBP11.23□□□□□ -0.61
LDLR-210ENST00000559340 PDE1AP54750 535 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 CXCL9Q07325 125 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 TMED8Q6PL24 325 aaPredicted RBP11.23□□□□□ -0.61
LDLR-210ENST00000559340 SLF2Q8IX21 1173 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 GPC2Q8N158 579 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 AGBL3Q8NEM8 1001 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 OSBPL3Q9H4L5 887 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 TLR7Q9NYK1 1049 aaKnown RBP11.23□□□□□ -0.61
LDLR-210ENST00000559340 HDAC9Q9UKV0 1011 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 IQSEC3Q9UPP2 1182 aaPredicted RBP11.23□□□□□ -0.61
LDLR-210ENST00000559340 MAST3O60307 1309 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 MYO5AQ9Y4I1 1855 aaKnown RBP11.23□□□□□ -0.61
LDLR-210ENST00000559340 MYH2Q9UKX2 1941 aa11.23□□□□□ -0.61
LDLR-210ENST00000559340 YDJCA8MPS7 323 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 PSMD14O00487 310 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 MCAMP43121 646 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 PRELPP51888 382 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 RASGRF1Q13972 1273 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 MFSD14BQ5SR56 506 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 RSBN1LQ6PCB5 846 aaPredicted RBP11.22□□□□□ -0.61
LDLR-210ENST00000559340 ERICH6Q7L0X2 663 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 TICAM2Q86XR7 235 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 PLEKHM2Q8IWE5 1019 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 OGFOD1Q8N543 542 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 RBM46Q8TBY0 533 aaKnown RBP11.22□□□□□ -0.61
LDLR-210ENST00000559340 DPF2Q92785 391 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 HAUS7Q99871 368 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 BOLA2Q9H3K6 86 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 SALL1Q9NSC2 1324 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 HMG20BQ9P0W2 317 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 GJA3Q9Y6H8 435 aa11.22□□□□□ -0.61
LDLR-210ENST00000559340 SCN4AP35499 1836 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 GLTPD2A6NH11 291 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 LDHBP07195 334 aaKnown RBP11.21□□□□□ -0.61
LDLR-210ENST00000559340 LDHCP07864 332 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 LMOD1P29536 600 aaPredicted RBP11.21□□□□□ -0.61
LDLR-210ENST00000559340 GSTO1P78417 241 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 MAP3K12Q12852 859 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 DACT2Q5SW24 774 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 ZSCAN25Q6NSZ9 544 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 DNAJC2Q99543 621 aaKnown RBP11.21□□□□□ -0.61
LDLR-210ENST00000559340 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.21□□□□□ -0.614e-9■□□□□ 9.3
LDLR-210ENST00000559340 NMRK2Q9NPI5 230 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 PAG1Q9NWQ8 432 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 LRP2BPQ9P2M1 347 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 ABCF2Q9UG63 623 aa11.21□□□□□ -0.61
LDLR-210ENST00000559340 SALL3Q9BXA9 1300 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 H7C1D1 291 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 ZAP70P43403 619 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 HDLBPQ00341 1268 aaKnown RBP11.2□□□□□ -0.62
LDLR-210ENST00000559340 FSTL1Q12841 308 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 CNTROBQ8N137 903 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 OTUD7AQ8TE49 926 aaPredicted RBP11.2□□□□□ -0.62
LDLR-210ENST00000559340 EVI5LQ96CN4 794 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 MRIQ9BWK5 157 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 KCNQ5Q9NR82 932 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 SNRKQ9NRH2 765 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 COL4A5P29400 1685 aa11.2□□□□□ -0.62
LDLR-210ENST00000559340 DOCK2Q92608 1830 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 IQCA1LA6NCM1 817 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 TRIM6-TRIM34B2RNG4 842 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 GOLIM4O00461 696 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 USP17L8P0C7I0 530 aa11.19□□□□□ -0.62
LDLR-210ENST00000559340 PDE4AP27815 886 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms