RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 FMR1Q06787 632 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS13C-207ENST00000558919 IKBKEQ14164 716 aa6.78□□□□□ -1.32
VPS13C-207ENST00000558919 KRTAP9-2Q9BYQ4 174 aa6.78□□□□□ -1.32
VPS13C-207ENST00000558919 SOX17Q9H6I2 414 aaPredicted RBP6.78□□□□□ -1.32
VPS13C-207ENST00000558919 PNMA6FA0A0J9YX94 578 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 METTL12A8MUP2 240 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 GADD45BO75293 160 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-207ENST00000558919 GRIA4P48058 902 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 FOXD4L6Q3SYB3 417 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-207ENST00000558919 PRPF40BQ6NWY9 871 aaKnown RBP6.77□□□□□ -1.33
VPS13C-207ENST00000558919 FOXD4L3Q6VB84 417 aaPredicted RBP6.77□□□□□ -1.33
VPS13C-207ENST00000558919 WFDC12Q8WWY7 111 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 KLHDC7BQ96G42 594 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 CARD10Q9BWT7 1032 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 NLRP2Q9NX02 1062 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 TRAK1Q9UPV9 953 aa6.77□□□□□ -1.33
VPS13C-207ENST00000558919 SOX1O00570 391 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 EIF4EBP3O60516 100 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 ESRRAP11474 423 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 PTPN12Q05209 780 aaKnown RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 C19orf57Q0VDD7 668 aa6.76□□□□□ -1.33
VPS13C-207ENST00000558919 EPS8L3Q8TE67 593 aaKnown RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 FBF1Q8TES7 1133 aa6.76□□□□□ -1.33
VPS13C-207ENST00000558919 PSMG3-AS1Q96PY0 264 aa6.76□□□□□ -1.33
VPS13C-207ENST00000558919 CLEC4MQ9H2X3 399 aaPredicted RBP6.76□□□□□ -1.33
VPS13C-207ENST00000558919 AKTIPQ9H8T0 292 aa6.76□□□□□ -1.33
VPS13C-207ENST00000558919 F8W735 103 aaPredicted RBP6.75□□□□□ -1.33
VPS13C-207ENST00000558919 ITPKAP23677 461 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 NOS3P29474 1203 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 MAPK8P45983 427 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 IREB2P48200 963 aaKnown RBP6.75□□□□□ -1.33
VPS13C-207ENST00000558919 COL19A1Q14993 1142 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 SPRED3Q2MJR0 410 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.75□□□□□ -1.33
VPS13C-207ENST00000558919 HOMEZQ8IX15 550 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 GLIS3Q8NEA6 775 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 SLC7A3Q8WY07 619 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 ABCB6Q9NP58 842 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 KCNK4Q9NYG8 393 aa6.75□□□□□ -1.33
VPS13C-207ENST00000558919 KRTAP9-6A0A140TA67 174 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 ADAM11O75078 769 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 ATP2B2Q01814 1243 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 DOC2BQ14184 412 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 GRM2Q14416 872 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 DUOXA2Q1HG44 320 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 ALG1LQ6GMV1 187 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 KRTAP1-3Q8IUG1 177 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 FOXD4L4Q8WXT5 416 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-207ENST00000558919 SSBP4Q9BWG4 385 aaPredicted RBP6.74□□□□□ -1.33
VPS13C-207ENST00000558919 ZNF576Q9H609 170 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 TPSG1Q9NRR2 321 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 PPP4R2Q9NY27 417 aa6.74□□□□□ -1.33
VPS13C-207ENST00000558919 TMEM238LA0A1B0GVL6 79 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 WISP1O95388 367 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 PCDH1Q08174 1060 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 RPS26P11Q5JNZ5 115 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-207ENST00000558919 HGSNATQ68CP4 663 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 Q6ZS46 218 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 GZF1Q9H116 711 aaPredicted RBP6.73□□□□□ -1.33
VPS13C-207ENST00000558919 ZFYVE1Q9HBF4 777 aa6.73□□□□□ -1.33
VPS13C-207ENST00000558919 DDX3YO15523 660 aaKnown RBP6.72□□□□□ -1.33
VPS13C-207ENST00000558919 ALX3O95076 343 aa6.72□□□□□ -1.33
VPS13C-207ENST00000558919 P4HBP07237 508 aaKnown RBP6.72□□□□□ -1.33
VPS13C-207ENST00000558919 XRCC5P13010 732 aaKnown RBP6.72□□□□□ -1.33
VPS13C-207ENST00000558919 ZNF423Q2M1K9 1284 aa6.72□□□□□ -1.33
VPS13C-207ENST00000558919 LARP7Q4G0J3 582 aaKnown RBP eCLIP6.72□□□□□ -1.33
VPS13C-207ENST00000558919 PI16Q6UXB8 463 aa6.72□□□□□ -1.33
VPS13C-207ENST00000558919 ACAD11Q709F0 780 aa6.72□□□□□ -1.33
VPS13C-207ENST00000558919 DZIP1LQ8IYY4 767 aaKnown RBP6.72□□□□□ -1.33
VPS13C-207ENST00000558919 BCO2Q9BYV7 579 aa6.72□□□□□ -1.33
VPS13C-207ENST00000558919 ANKRD33BA6NCL7 494 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 GIPC1O14908 333 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 B3GALT4O96024 378 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 NLRP12P59046 1061 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 FGD1P98174 961 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 DNAJC14Q6Y2X3 702 aaPredicted RBP6.71□□□□□ -1.34
VPS13C-207ENST00000558919 KIAA1211Q6ZU35 1233 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 AGGF1Q8N302 714 aaeCLIP6.71□□□□□ -1.34
VPS13C-207ENST00000558919 DDX54Q8TDD1 881 aaKnown RBP6.71□□□□□ -1.34
VPS13C-207ENST00000558919 UBASH3BQ8TF42 649 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 MEGF10Q96KG7 1140 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 WWC3Q9ULE0 1092 aa6.71□□□□□ -1.34
VPS13C-207ENST00000558919 FURINP09958 794 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 GSTM4Q03013 218 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 RSPO4Q2I0M5 234 aaPredicted RBP6.7□□□□□ -1.34
VPS13C-207ENST00000558919 CCDC27Q2M243 656 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 NKAPLQ5M9Q1 402 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 DTHD1Q6ZMT9 781 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 TP53INP1Q96A56 240 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 CEP41Q9BYV8 373 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 SRCIN1Q9C0H9 1055 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 RNF208Q9H0X6 261 aa6.7□□□□□ -1.34
VPS13C-207ENST00000558919 MEGF11A6BM72 1044 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 LDHBP07195 334 aaKnown RBP6.69□□□□□ -1.34
VPS13C-207ENST00000558919 H2AFB1P0C5Y9 115 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 H2AFB2P0C5Z0 115 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 GLB1P16278 677 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 ERCC3P19447 782 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 FCGRTP55899 365 aa6.69□□□□□ -1.34
VPS13C-207ENST00000558919 NXPE4Q6UWF7 544 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms