RNA–Protein interactions for RNA: ENST00000557626.5

TMEM260-215, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 1,262 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-215ENST00000557626 CAPN2P17655 700 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 PSMC4P43686 418 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 GTF2A2P52657 109 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 SUPT20HL1Q3ZLR7 823 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 HSP90AB3PQ58FF7 597 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 TJAP1Q5JTD0 557 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 PHACTR3Q96KR7 559 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 MIS18AQ9NYP9 233 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 KNSTRNQ9Y448 316 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 PPP2R3BQ9Y5P8 575 aa17.5■□□□□ 0.39
TMEM260-215ENST00000557626 SYNGAP1Q96PV0 1343 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 OSBPP22059 807 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 MMP14P50281 582 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 RPS8P62241 208 aaKnown RBP17.49■□□□□ 0.39
TMEM260-215ENST00000557626 SF3B3Q15393 1217 aaKnown RBP17.49■□□□□ 0.39
TMEM260-215ENST00000557626 DACT2Q5SW24 774 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 NECAB2Q7Z6G3 386 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 CDX2Q99626 313 aaPredicted RBP17.49■□□□□ 0.39
TMEM260-215ENST00000557626 NCOR1O75376 2440 aa17.49■□□□□ 0.39
TMEM260-215ENST00000557626 USP2O75604 605 aaPredicted RBP17.48■□□□□ 0.39
TMEM260-215ENST00000557626 DCTN1Q14203 1278 aa17.48■□□□□ 0.39
TMEM260-215ENST00000557626 TAF7Q15545 349 aaPredicted RBP17.48■□□□□ 0.39
TMEM260-215ENST00000557626 CACNA1AO00555 2505 aa17.48■□□□□ 0.39
TMEM260-215ENST00000557626 BDP1A6H8Y1 2624 aa17.48■□□□□ 0.39
TMEM260-215ENST00000557626 FAM205AQ6ZU69 1335 aa17.47■□□□□ 0.39
TMEM260-215ENST00000557626 ECM29Q5VYK3 1845 aa17.47■□□□□ 0.39
TMEM260-215ENST00000557626 FMNL1O95466 1100 aaPredicted RBP17.47■□□□□ 0.39
TMEM260-215ENST00000557626 CTGFP29279 349 aa17.47■□□□□ 0.39
TMEM260-215ENST00000557626 SLAIN1Q8ND83 568 aa17.47■□□□□ 0.39
TMEM260-215ENST00000557626 HELBQ8NG08 1087 aaPredicted RBP17.47■□□□□ 0.39
TMEM260-215ENST00000557626 ZNF428Q96B54 188 aa17.47■□□□□ 0.39
TMEM260-215ENST00000557626 THUMPD2Q9BTF0 503 aaKnown RBP17.47■□□□□ 0.39
TMEM260-215ENST00000557626 PRKAR2BP31323 418 aa17.46■□□□□ 0.39
TMEM260-215ENST00000557626 DIS3LQ8TF46 1054 aaKnown RBP17.46■□□□□ 0.39
TMEM260-215ENST00000557626 ZBED3Q96IU2 234 aaPredicted RBP17.46■□□□□ 0.39
TMEM260-215ENST00000557626 DEFB118Q96PH6 123 aa17.46■□□□□ 0.39
TMEM260-215ENST00000557626 COL2A1P02458 1487 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-215ENST00000557626 COL3A1P02461 1466 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-215ENST00000557626 NBPF12Q5TAG4 269 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-215ENST00000557626 CNKSR2Q8WXI2 1034 aa17.45■□□□□ 0.38
TMEM260-215ENST00000557626 ZCCHC17Q9NP64 241 aaKnown RBP17.44■□□□□ 0.38
TMEM260-215ENST00000557626 ZNF804BA4D1E1 1349 aa17.44■□□□□ 0.38
TMEM260-215ENST00000557626 PRKCZQ05513 592 aa17.43■□□□□ 0.38
TMEM260-215ENST00000557626 STRIP1Q5VSL9 837 aa17.43■□□□□ 0.38
TMEM260-215ENST00000557626 KIAA0825Q8IV33 1275 aa17.43■□□□□ 0.38
TMEM260-215ENST00000557626 EIF4A1P60842 406 aaKnown RBP17.42■□□□□ 0.38
TMEM260-215ENST00000557626 C17orf99Q6UX52 265 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 LRP10Q7Z4F1 713 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 MYLIPQ8WY64 445 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 CPA4Q9UI42 421 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 XDHP47989 1333 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 ADGRA2Q96PE1 1338 aa17.42■□□□□ 0.38
TMEM260-215ENST00000557626 BTBD19C9JJ37 291 aa17.41■□□□□ 0.38
TMEM260-215ENST00000557626 CETPP11597 493 aa17.41■□□□□ 0.38
TMEM260-215ENST00000557626 DLGAP5Q15398 846 aa17.41■□□□□ 0.38
TMEM260-215ENST00000557626 FAM89AQ96GI7 184 aa17.41■□□□□ 0.38
TMEM260-215ENST00000557626 CRISPLD2Q9H0B8 497 aa17.41■□□□□ 0.38
TMEM260-215ENST00000557626 INHAP05111 366 aa17.4■□□□□ 0.38
TMEM260-215ENST00000557626 FOSL2P15408 326 aa17.4■□□□□ 0.38
TMEM260-215ENST00000557626 ATP2B4P23634 1241 aa17.4■□□□□ 0.38
TMEM260-215ENST00000557626 PNISRQ8TF01 805 aaKnown RBP17.4■□□□□ 0.38
TMEM260-215ENST00000557626 RSPH6AQ9H0K4 717 aa17.4■□□□□ 0.38
TMEM260-215ENST00000557626 PAK6Q9NQU5 681 aaPredicted RBP17.4■□□□□ 0.38
TMEM260-215ENST00000557626 ARIH1Q9Y4X5 557 aaPredicted RBP17.4■□□□□ 0.38
TMEM260-215ENST00000557626 MGAMO43451 1857 aa17.39■□□□□ 0.38
TMEM260-215ENST00000557626 HTATSF1O43719 755 aaKnown RBP17.39■□□□□ 0.37
TMEM260-215ENST00000557626 MYO1BO43795 1136 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 AMER1Q5JTC6 1135 aaPredicted RBP17.39■□□□□ 0.37
TMEM260-215ENST00000557626 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.39■□□□□ 0.37
TMEM260-215ENST00000557626 SEMA6BQ9H3T3 888 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 VEZTQ9HBM0 779 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 SEC31BQ9NQW1 1179 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 HCN4Q9Y3Q4 1203 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 MED23Q9ULK4 1368 aa17.39■□□□□ 0.37
TMEM260-215ENST00000557626 CLRN2A0PK11 232 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 ADCY3O60266 1144 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 ANXA1P04083 346 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 AIMP1Q12904 312 aaKnown RBP17.38■□□□□ 0.37
TMEM260-215ENST00000557626 VGLL4Q14135 290 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 PDIA6Q15084 440 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 PROSER3Q2NL68 480 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 ANKLE1Q8NAG6 615 aa17.38■□□□□ 0.37
TMEM260-215ENST00000557626 MDM2Q00987 491 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-215ENST00000557626 RTL5Q5HYW3 569 aaPredicted RBP17.37■□□□□ 0.37
TMEM260-215ENST00000557626 NBPF3Q9H094 633 aa17.37■□□□□ 0.37
TMEM260-215ENST00000557626 CSADQ9Y600 493 aa17.37■□□□□ 0.37
TMEM260-215ENST00000557626 DDX60LQ5H9U9 1706 aaKnown RBP17.37■□□□□ 0.37
TMEM260-215ENST00000557626 DNAH12Q6ZR08 3092 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 ELNP15502 786 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 FCGRTP55899 365 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 TTLL5Q6EMB2 1281 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 COPS6Q7L5N1 327 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 GABRQQ9UN88 632 aa17.36■□□□□ 0.37
TMEM260-215ENST00000557626 IRS4O14654 1257 aaPredicted RBP17.35■□□□□ 0.37
TMEM260-215ENST00000557626 EIF2S2P20042 333 aaKnown RBP17.35■□□□□ 0.37
TMEM260-215ENST00000557626 RASA3Q14644 834 aa17.35■□□□□ 0.37
TMEM260-215ENST00000557626 XAGE3Q8WTP9 111 aa17.35■□□□□ 0.37
TMEM260-215ENST00000557626 COA1Q9GZY4 146 aa17.35■□□□□ 0.37
TMEM260-215ENST00000557626 MAP3K9P80192 1104 aa17.34■□□□□ 0.37
TMEM260-215ENST00000557626 SNAPC2Q13487 334 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms