RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 ZNF532Q9HCE3 1301 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 DOCK2Q92608 1830 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 HMGB1P09429 215 aaKnown RBP11.98□□□□□ -0.49
TMEM260-211ENST00000556648 PDE6AP16499 860 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 UBE2HP62256 183 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 RASGRF1Q13972 1273 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 SLC9C2Q5TAH2 1124 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 LPIN2Q92539 896 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 ATP6V1DQ9Y5K8 247 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 ZNF831Q5JPB2 1677 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 BTAF1O14981 1849 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 TCRBV5S4A2TA0A5A2 114 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 LRRFIP1Q32MZ4 808 aaKnown RBP11.98□□□□□ -0.49
TMEM260-211ENST00000556648 ERFEQ4G0M1 354 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 TTC6Q86TZ1 520 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 NSUN7Q8NE18 718 aaKnown RBP11.98□□□□□ -0.49
TMEM260-211ENST00000556648 MPHOSPH8Q99549 860 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 AGXT2Q9BYV1 514 aa11.98□□□□□ -0.49
TMEM260-211ENST00000556648 NAP1L2Q9ULW6 460 aaPredicted RBP11.98□□□□□ -0.49
TMEM260-211ENST00000556648 WTIPA6NIX2 430 aaPredicted RBP11.97□□□□□ -0.49
TMEM260-211ENST00000556648 SLC5A1P13866 664 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 PDCP20941 246 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 ANTXR2P58335 489 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 RESTQ13127 1097 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 CCDC152Q4G0S7 254 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 BICDL1Q6ZP65 573 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 RAB11FIP4Q86YS3 637 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 TBC1D10CQ8IV04 446 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 RNF214Q8ND24 703 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 SMARCC2Q8TAQ2 1214 aa11.97□□□□□ -0.49
TMEM260-211ENST00000556648 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.97□□□□□ -0.49
TMEM260-211ENST00000556648 PTPDC1A2A3K4 754 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 UQCRFS1P1P0C7P4 283 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 BCAMP50895 628 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 IMMTQ16891 758 aaKnown RBP11.96□□□□□ -0.49
TMEM260-211ENST00000556648 MB21D2Q8IYB1 491 aaPredicted RBP11.96□□□□□ -0.49
TMEM260-211ENST00000556648 SPATA5Q8NB90 893 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 TFIP11Q9UBB9 837 aaKnown RBP11.96□□□□□ -0.49
TMEM260-211ENST00000556648 CTNNA3Q9UI47 895 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 THSD7AQ9UPZ6 1657 aa11.96□□□□□ -0.49
TMEM260-211ENST00000556648 RTL9Q8NET4 1388 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 PRC1O43663 620 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 PDIA3P30101 505 aaKnown RBP11.96□□□□□ -0.5
TMEM260-211ENST00000556648 IGHMBP2P38935 993 aaKnown RBP11.96□□□□□ -0.5
TMEM260-211ENST00000556648 CHRNDQ07001 517 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 TTF1Q15361 905 aaPredicted RBP11.96□□□□□ -0.5
TMEM260-211ENST00000556648 CCDC183Q5T5S1 534 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 AMIGO3Q86WK7 504 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 SYAP1Q96A49 352 aaPredicted RBP11.96□□□□□ -0.5
TMEM260-211ENST00000556648 PPP1R9BQ96SB3 815 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 TSPY26PQ9H489 355 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 BCL2L12Q9HB09 334 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 SRP68Q9UHB9 627 aaKnown RBP11.96□□□□□ -0.5
TMEM260-211ENST00000556648 MYH15Q9Y2K3 1946 aa11.96□□□□□ -0.5
TMEM260-211ENST00000556648 NHSQ6T4R5 1651 aa11.95□□□□□ -0.5
TMEM260-211ENST00000556648 CCDC173Q0VFZ6 552 aa11.95□□□□□ -0.5
TMEM260-211ENST00000556648 UBE3CQ15386 1083 aa11.95□□□□□ -0.5
TMEM260-211ENST00000556648 TBC1D9BQ66K14 1250 aa11.95□□□□□ -0.5
TMEM260-211ENST00000556648 SALL1Q9NSC2 1324 aa11.95□□□□□ -0.5
TMEM260-211ENST00000556648 KRT85P78386 507 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 ZSCAN25Q6NSZ9 544 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 MAGEB6Q8N7X4 407 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 IQSEC3Q9UPP2 1182 aaPredicted RBP11.94□□□□□ -0.5
TMEM260-211ENST00000556648 ZNF652Q9Y2D9 606 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 CNTNAP4Q9C0A0 1308 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 COL1A1P02452 1464 aaPredicted RBP11.94□□□□□ -0.5
TMEM260-211ENST00000556648 ZNF213O14771 459 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 PPP4R3CPQ6ZMV5 832 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 CCDC24Q8N4L8 307 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 FAM184AQ8NB25 1140 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 LLPHQ9BRT6 129 aaKnown RBP11.94□□□□□ -0.5
TMEM260-211ENST00000556648 EPB41L4AQ9HCS5 686 aaPredicted RBP11.94□□□□□ -0.5
TMEM260-211ENST00000556648 INCENPQ9NQS7 918 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 C4AP0C0L4 1744 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 C4BP0C0L5 1744 aa11.94□□□□□ -0.5
TMEM260-211ENST00000556648 MBD4O95243 580 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 APPP05067 770 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 LIG1P18858 919 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 GUCY1B3Q02153 619 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 CYB5R4Q7L1T6 521 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 FNBP4Q8N3X1 1017 aaPredicted RBP11.93□□□□□ -0.5
TMEM260-211ENST00000556648 STRBPQ96SI9 672 aaKnown RBP11.93□□□□□ -0.5
TMEM260-211ENST00000556648 ARMT1Q9H993 441 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 USP21Q9UK80 565 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 HPS5Q9UPZ3 1129 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 TACC3Q9Y6A5 838 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 COL24A1Q17RW2 1714 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 KLF18A0A0U1RQI7 1052 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 H3BQV1 296 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 CSPP1Q1MSJ5 1256 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 IFFO2Q5TF58 517 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 GIMAP6Q6P9H5 292 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 NCOA7Q8NI08 942 aa11.93□□□□□ -0.5
TMEM260-211ENST00000556648 LEO1Q8WVC0 666 aaPredicted RBP11.93□□□□□ -0.5
TMEM260-211ENST00000556648 ZNF274Q96GC6 653 aaPredicted RBP11.93□□□□□ -0.5
TMEM260-211ENST00000556648 FTOQ9C0B1 505 aaKnown RBP eCLIP11.93□□□□□ -0.5
TMEM260-211ENST00000556648 NEDD4P46934 1319 aa11.92□□□□□ -0.5
TMEM260-211ENST00000556648 GOLGA8BA8MQT2 603 aa11.92□□□□□ -0.5
TMEM260-211ENST00000556648 PRKAB2O43741 272 aa11.92□□□□□ -0.5
TMEM260-211ENST00000556648 FDPSP14324 419 aaKnown RBP11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms