RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 CABP4P57796 275 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 TAGLNQ01995 201 aaKnown RBP8.13□□□□□ -1.11
SCFD1-221ENST00000556534 GRIK4Q16099 956 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 NXPE4Q6UWF7 544 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 TMEM151AQ8N4L1 468 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 WNT8BQ93098 351 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 DUSP9Q99956 384 aaKnown RBP8.13□□□□□ -1.11
SCFD1-221ENST00000556534 CARD10Q9BWT7 1032 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 OSBPL7Q9BZF2 842 aa8.13□□□□□ -1.11
SCFD1-221ENST00000556534 ITGB2P05107 769 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 ESRRAP11474 423 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-221ENST00000556534 GNA15P30679 374 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 PIP4K2BP78356 416 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 PTPN12Q05209 780 aaKnown RBP8.12□□□□□ -1.11
SCFD1-221ENST00000556534 FOXD4L6Q3SYB3 417 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-221ENST00000556534 HGSNATQ68CP4 663 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 FAM117BQ6P1L5 589 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 FOXD4L3Q6VB84 417 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-221ENST00000556534 C3orf58Q8NDZ4 430 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 CLEC4MQ9H2X3 399 aaPredicted RBP8.12□□□□□ -1.11
SCFD1-221ENST00000556534 SPG7Q9UQ90 795 aa8.12□□□□□ -1.11
SCFD1-221ENST00000556534 SELPP16109 830 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 CHRNA4P43681 627 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 FGD1P98174 961 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 PCDH1Q08174 1060 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 IKBKEQ14164 716 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 SHISA2Q6UWI4 295 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 C12orf49Q9H741 205 aa8.11□□□□□ -1.11
SCFD1-221ENST00000556534 SOX1O00570 391 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-221ENST00000556534 GIPC1O14908 333 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 FCGRTP55899 365 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 KLHL23Q8NBE8 558 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 FRMD6Q96NE9 622 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 SRCIN1Q9C0H9 1055 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 SOX17Q9H6I2 414 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-221ENST00000556534 OSGEPQ9NPF4 335 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 SEC31BQ9NQW1 1179 aa8.1□□□□□ -1.11
SCFD1-221ENST00000556534 ADAM11O75078 769 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 B3GALT4O96024 378 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 ZNF423Q2M1K9 1284 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 CD163Q86VB7 1156 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 DCAF11Q8TEB1 546 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 FOXD4L4Q8WXT5 416 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-221ENST00000556534 SLC7A3Q8WY07 619 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 KLHDC7BQ96G42 594 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 NACC1Q96RE7 527 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 BCL2L13Q9BXK5 485 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 KCNK4Q9NYG8 393 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 PARP2Q9UGN5 583 aa8.09□□□□□ -1.11
SCFD1-221ENST00000556534 WISP1O95388 367 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 APBA3O96018 575 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 XRCC5P13010 732 aaKnown RBP8.08□□□□□ -1.12
SCFD1-221ENST00000556534 CD68P34810 354 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-221ENST00000556534 C19orf57Q0VDD7 668 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 FAAP100Q0VG06 881 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 PLA2G4EQ3MJ16 856 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 RPS26P11Q5JNZ5 115 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-221ENST00000556534 DTHD1Q6ZMT9 781 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 GIPC2Q8TF65 315 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 LENG1Q96BZ8 264 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-221ENST00000556534 NRSN2Q9GZP1 204 aa8.08□□□□□ -1.12
SCFD1-221ENST00000556534 C1QTNF9BB2RNN3 333 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 USP17L7P0C7H9 530 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 GSTT1P30711 240 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 DAB2P98082 770 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 SUZ12Q15022 739 aaKnown RBP8.07□□□□□ -1.12
SCFD1-221ENST00000556534 IGF2-ASQ6U949 168 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 TMC4Q7Z404 712 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 FAM8A1Q9UBU6 413 aa8.07□□□□□ -1.12
SCFD1-221ENST00000556534 C9orf172C9J069 976 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 DDX3YO15523 660 aaKnown RBP8.06□□□□□ -1.12
SCFD1-221ENST00000556534 ADGRE1Q14246 886 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 MBTPS1Q14703 1052 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 UBASH3BQ8TF42 649 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 FAM161BQ96MY7 647 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 AK5Q9Y6K8 562 aa8.06□□□□□ -1.12
SCFD1-221ENST00000556534 EIF4BP23588 611 aaKnown RBP8.05□□□□□ -1.12
SCFD1-221ENST00000556534 ARL4DP49703 201 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 NLRP12P59046 1061 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 PSMD2Q13200 908 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.05□□□□□ -1.12
SCFD1-221ENST00000556534 RGS22Q8NE09 1264 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 TRIM56Q9BRZ2 755 aaKnown RBP8.05□□□□□ -1.12
SCFD1-221ENST00000556534 MRPL18Q9H0U6 180 aaKnown RBP8.05□□□□□ -1.12
SCFD1-221ENST00000556534 PPP4R2Q9NY27 417 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 PPM1HQ9ULR3 514 aa8.05□□□□□ -1.12
SCFD1-221ENST00000556534 ZNF16P17020 682 aaPredicted RBP8.04□□□□□ -1.12
SCFD1-221ENST00000556534 NRG1Q02297 640 aaPredicted RBP8.04□□□□□ -1.12
SCFD1-221ENST00000556534 GSTM4Q03013 218 aa8.04□□□□□ -1.12
SCFD1-221ENST00000556534 ANKRD24Q8TF21 1146 aa8.04□□□□□ -1.12
SCFD1-221ENST00000556534 USP21Q9UK80 565 aa8.04□□□□□ -1.12
SCFD1-221ENST00000556534 AKAP2Q9Y2D5 859 aa8.04□□□□□ -1.12
SCFD1-221ENST00000556534 CCDC9Q9Y3X0 531 aaKnown RBP8.04□□□□□ -1.12
SCFD1-221ENST00000556534 F8W735 103 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-221ENST00000556534 XPCQ01831 940 aaPredicted RBP8.03□□□□□ -1.12
SCFD1-221ENST00000556534 KIAA1211Q6ZU35 1233 aa8.03□□□□□ -1.12
SCFD1-221ENST00000556534 ACAD11Q709F0 780 aa8.03□□□□□ -1.12
SCFD1-221ENST00000556534 ZFYVE1Q9HBF4 777 aa8.03□□□□□ -1.12
SCFD1-221ENST00000556534 LOC100996750A0A140TA64 210 aa8.02□□□□□ -1.13
SCFD1-221ENST00000556534 LOC100289279A0A1B0GTE1 492 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms