RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 GALNT12Q8IXK2 581 aa9.78□□□□□ -0.84
PRPF39-209ENST00000556353 TMC1Q8TDI8 760 aa9.77□□□□□ -0.85
PRPF39-209ENST00000556353 UBL7Q96S82 380 aaPredicted RBP9.77□□□□□ -0.85
PRPF39-209ENST00000556353 FAM129BQ96TA1 746 aa9.77□□□□□ -0.85
PRPF39-209ENST00000556353 SCO2A0A1W2PP80 73 aa9.76□□□□□ -0.85
PRPF39-209ENST00000556353 A0A1W2PP55 124 aa9.75□□□□□ -0.85
PRPF39-209ENST00000556353 SOX1O00570 391 aaPredicted RBP9.75□□□□□ -0.85
PRPF39-209ENST00000556353 BRD1O95696 1058 aa9.75□□□□□ -0.85
PRPF39-209ENST00000556353 USPL1Q5W0Q7 1092 aa9.75□□□□□ -0.85
PRPF39-209ENST00000556353 HGSNATQ68CP4 663 aa9.75□□□□□ -0.85
PRPF39-209ENST00000556353 SOWAHDA6NJG2 315 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 METTL12A8MUP2 240 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 CPNE3O75131 537 aaKnown RBP9.74□□□□□ -0.85
PRPF39-209ENST00000556353 ORC1Q13415 861 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 UVSSAQ2YD98 709 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 XP32Q5T750 250 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 RUSC1Q9BVN2 902 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 RNF208Q9H0X6 261 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 LIN7BQ9HAP6 207 aa9.74□□□□□ -0.85
PRPF39-209ENST00000556353 DHX15O43143 795 aaKnown RBP9.73□□□□□ -0.85
PRPF39-209ENST00000556353 ESRRAP11474 423 aaPredicted RBP9.73□□□□□ -0.85
PRPF39-209ENST00000556353 CCNJLQ8IV13 435 aa9.73□□□□□ -0.85
PRPF39-209ENST00000556353 SOX17Q9H6I2 414 aaPredicted RBP9.73□□□□□ -0.85
PRPF39-209ENST00000556353 GNEQ9Y223 722 aaKnown RBP9.73□□□□□ -0.85
PRPF39-209ENST00000556353 RAXQ9Y2V3 346 aa9.73□□□□□ -0.85
PRPF39-209ENST00000556353 GPR182O15218 404 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 FSTP19883 344 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 ANKRD34AQ69YU3 496 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 SLC51AQ86UW1 340 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 UTP4Q969X6 686 aaKnown RBP9.72□□□□□ -0.85
PRPF39-209ENST00000556353 FAM46AQ96IP4 442 aaKnown RBP9.72□□□□□ -0.85
PRPF39-209ENST00000556353 TCF12Q99081 682 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 USP26Q9BXU7 913 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 NIF3L1Q9GZT8 377 aa9.72□□□□□ -0.85
PRPF39-209ENST00000556353 BIN2Q9UBW5 565 aaPredicted RBP9.72□□□□□ -0.85
PRPF39-209ENST00000556353 A0A096LPE4 126 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 A0A1W2PPZ6 126 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 SART1O43290 800 aaKnown RBP9.71□□□□□ -0.86
PRPF39-209ENST00000556353 EIF4EBP3O60516 100 aaPredicted RBP9.71□□□□□ -0.86
PRPF39-209ENST00000556353 KIAA0319Q5VV43 1072 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 ARMC10Q8N2F6 343 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 DMRTB1Q96MA1 342 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 RBCK1Q9BYM8 510 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 DNAJC25Q9H1X3 360 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 STOML1Q9UBI4 398 aa9.71□□□□□ -0.86
PRPF39-209ENST00000556353 EIF1AYO14602 144 aaKnown RBP9.7□□□□□ -0.86
PRPF39-209ENST00000556353 GRIA4P48058 902 aa9.7□□□□□ -0.86
PRPF39-209ENST00000556353 FDX2Q6P4F2 183 aa9.7□□□□□ -0.86
PRPF39-209ENST00000556353 EHD4Q9H223 541 aa9.7□□□□□ -0.86
PRPF39-209ENST00000556353 CLEC4MQ9H2X3 399 aaPredicted RBP9.7□□□□□ -0.86
PRPF39-209ENST00000556353 NPHS2Q9NP85 383 aa9.7□□□□□ -0.86
PRPF39-209ENST00000556353 IGHA2P01877 340 aa9.69□□□□□ -0.86
PRPF39-209ENST00000556353 GSTM4Q03013 218 aa9.69□□□□□ -0.86
PRPF39-209ENST00000556353 PCDH1Q08174 1060 aa9.69□□□□□ -0.86
PRPF39-209ENST00000556353 SPRED3Q2MJR0 410 aa9.69□□□□□ -0.86
PRPF39-209ENST00000556353 MYRFLQ96LU7 910 aa9.69□□□□□ -0.86
PRPF39-209ENST00000556353 MEGF11A6BM72 1044 aa9.68□□□□□ -0.86
PRPF39-209ENST00000556353 GSC2O15499 205 aa9.68□□□□□ -0.86
PRPF39-209ENST00000556353 PREPP48147 710 aa9.68□□□□□ -0.86
PRPF39-209ENST00000556353 ARTNQ5T4W7 220 aa9.68□□□□□ -0.86
PRPF39-209ENST00000556353 CCDC74AQ96AQ1 378 aa9.68□□□□□ -0.86
PRPF39-209ENST00000556353 LOC100289279A0A1B0GTE1 492 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 LRP8Q14114 963 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 NUTM2GQ5VZR2 741 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.67□□□□□ -0.86
PRPF39-209ENST00000556353 ALKBH8Q96BT7 664 aaKnown RBP9.67□□□□□ -0.86
PRPF39-209ENST00000556353 CSRNP1Q96S65 589 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 ZFP64Q9NPA5 681 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 DCTN4Q9UJW0 460 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 RNF112Q9ULX5 631 aa9.67□□□□□ -0.86
PRPF39-209ENST00000556353 GAS2O43903 313 aaKnown RBP9.66□□□□□ -0.86
PRPF39-209ENST00000556353 FAM20CQ8IXL6 584 aa9.66□□□□□ -0.86
PRPF39-209ENST00000556353 TMPRSS13Q9BYE2 586 aa9.66□□□□□ -0.86
PRPF39-209ENST00000556353 CYP4F12Q9HCS2 524 aa9.66□□□□□ -0.86
PRPF39-209ENST00000556353 GADD45BO75293 160 aaPredicted RBP9.65□□□□□ -0.86
PRPF39-209ENST00000556353 BMP3P12645 472 aa9.65□□□□□ -0.86
PRPF39-209ENST00000556353 ZNF423Q2M1K9 1284 aa9.65□□□□□ -0.86
PRPF39-209ENST00000556353 C12orf50Q8NA57 414 aaPredicted RBP9.65□□□□□ -0.86
PRPF39-209ENST00000556353 HIF3AQ9Y2N7 669 aa9.65□□□□□ -0.86
PRPF39-209ENST00000556353 IGLV1-40P01703 118 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 EXOSC6Q5RKV6 272 aaKnown RBP9.64□□□□□ -0.87
PRPF39-209ENST00000556353 TMC7Q7Z402 723 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 TRIM42Q8IWZ5 723 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 SMG8Q8ND04 991 aaKnown RBP9.64□□□□□ -0.87
PRPF39-209ENST00000556353 DDX54Q8TDD1 881 aaKnown RBP9.64□□□□□ -0.87
PRPF39-209ENST00000556353 KCNF1Q9H3M0 494 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 C7orf69Q9H7B7 122 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 SUGCTQ9HAC7 445 aa9.64□□□□□ -0.87
PRPF39-209ENST00000556353 HMX2A2RU54 273 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 DLGAP3O95886 979 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 CYP11A1P05108 521 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 ITPKAP23677 461 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 MAPK1P28482 360 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 CLEC10AQ8IUN9 316 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 ZNF576Q9H609 170 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 TRAK1Q9UPV9 953 aa9.63□□□□□ -0.87
PRPF39-209ENST00000556353 PTPN12Q05209 780 aaKnown RBP9.62□□□□□ -0.87
PRPF39-209ENST00000556353 NFIAQ12857 509 aa9.62□□□□□ -0.87
PRPF39-209ENST00000556353 PRPF40BQ6NWY9 871 aaKnown RBP9.62□□□□□ -0.87
PRPF39-209ENST00000556353 BEND4Q6ZU67 534 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms