RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 MACROD2A1Z1Q3 448 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 SPDYE4A6NLX3 237 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 F13A1P00488 732 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 PPP1R14CQ8TAE6 165 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 MTRF1LQ9UGC7 380 aaKnown RBP12.13□□□□□ -0.47
ACTN1-216ENST00000556083 EXOC7Q9UPT5 735 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ATP5J2-PTCD1G3V325 749 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 FAM13AO94988 1023 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 GNG11P61952 73 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ASIC1P78348 528 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 WDR66Q8TBY9 1149 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ARFGAP3Q9NP61 516 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.13□□□□□ -0.47
ACTN1-216ENST00000556083 YTHDC2Q9H6S0 1430 aaKnown RBP12.13□□□□□ -0.47
ACTN1-216ENST00000556083 DISP3Q9P2K9 1392 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 SLC8A3P57103 927 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 DTHD1Q6ZMT9 781 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ATP5DP30049 168 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ZNF710Q8N1W2 664 aa12.13□□□□□ -0.47
ACTN1-216ENST00000556083 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.13□□□□□ -0.47
ACTN1-216ENST00000556083 ABCC1P33527 1531 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 GUCY1B3Q02153 619 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 CEP135Q66GS9 1140 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 SMC5Q8IY18 1101 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 TBC1D22AQ8WUA7 517 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 KIFAP3Q92845 792 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 ERBB4Q15303 1308 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 SBNO1A3KN83 1393 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 EDC4Q6P2E9 1401 aaKnown RBP12.12□□□□□ -0.47
ACTN1-216ENST00000556083 SLU7O95391 586 aaKnown RBP12.12□□□□□ -0.47
ACTN1-216ENST00000556083 LMOD1P29536 600 aaPredicted RBP12.12□□□□□ -0.47
ACTN1-216ENST00000556083 EIF4A2Q14240 407 aaKnown RBP12.12□□□□□ -0.47
ACTN1-216ENST00000556083 FLAD1Q8NFF5 587 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 NEK11Q8NG66 645 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 PLBD2Q8NHP8 589 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 CEP63Q96MT8 703 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 TNNC1P63316 161 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.12□□□□□ -0.47
ACTN1-216ENST00000556083 HOMEZQ8IX15 550 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC110Q8TBZ0 833 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC42Q96M95 316 aa12.12□□□□□ -0.47
ACTN1-216ENST00000556083 EIF4G3O43432 1585 aaKnown RBP12.11□□□□□ -0.47
ACTN1-216ENST00000556083 IRS4O14654 1257 aaPredicted RBP12.11□□□□□ -0.47
ACTN1-216ENST00000556083 HOXA7P31268 230 aaPredicted RBP12.11□□□□□ -0.47
ACTN1-216ENST00000556083 PLCD4Q9BRC7 762 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 ARHGEF10LQ9HCE6 1279 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 VAT1LQ9HCJ6 419 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 CTAGE9A4FU28 777 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 GAS8O95995 478 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 HEATR3Q7Z4Q2 680 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 CDAN1Q8IWY9 1227 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 ANKS4BQ8N8V4 417 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 NUP58Q9BVL2 599 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 NUCKS1Q9H1E3 243 aaKnown RBP12.11□□□□□ -0.47
ACTN1-216ENST00000556083 SMTNP53814 917 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 SNRKQ9NRH2 765 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 BRPF3Q9ULD4 1205 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 SH3TC1Q8TE82 1336 aa12.11□□□□□ -0.47
ACTN1-216ENST00000556083 DEXIO95424 95 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 PRPF4BQ13523 1007 aaKnown RBP12.1□□□□□ -0.47
ACTN1-216ENST00000556083 MAATS1Q7Z4T9 603 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 PUF60Q9UHX1 559 aaKnown RBP12.1□□□□□ -0.47
ACTN1-216ENST00000556083 ZMYM3Q14202 1370 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 ELP1O95163 1332 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 TFIP11Q9UBB9 837 aaKnown RBP12.1□□□□□ -0.47
ACTN1-216ENST00000556083 POLKQ9UBT6 870 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 UBAP1LF5GYI3 381 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 RAB3IL1Q8TBN0 382 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 CPLX3Q8WVH0 158 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 NOX5Q96PH1 765 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 A0A1W2PRG0 241 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 PARP1P09874 1014 aaKnown RBP12.1□□□□□ -0.47
ACTN1-216ENST00000556083 CNGA1P29973 690 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 HSPA4P34932 840 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 Q6ZUG5 572 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 IWS1Q96ST2 819 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 MEIS3Q99687 375 aa12.1□□□□□ -0.47
ACTN1-216ENST00000556083 STX10O60499 249 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 GCP02774 474 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 TCHPQ9BT92 498 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 VAV2P52735 878 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 PUM3Q15397 648 aaKnown RBP12.09□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC184Q52MB2 194 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 CNNM4Q6P4Q7 775 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 PAXIP1Q6ZW49 1069 aaPredicted RBP12.09□□□□□ -0.47
ACTN1-216ENST00000556083 IBTKQ9P2D0 1353 aaPredicted RBP12.09□□□□□ -0.47
ACTN1-216ENST00000556083 EYA2O00167 538 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 RNMTO43148 476 aaKnown RBP12.09□□□□□ -0.47
ACTN1-216ENST00000556083 HAND2P61296 217 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 MAP3K9P80192 1104 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 TRAPPC3LQ5T215 181 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 SMC6Q96SB8 1091 aa12.09□□□□□ -0.47
ACTN1-216ENST00000556083 LUC7L2Q9Y383 392 aaKnown RBP12.09□□□□□ -0.47
ACTN1-216ENST00000556083 CCDC129Q6ZRS4 1044 aa12.08□□□□□ -0.47
ACTN1-216ENST00000556083 SV2BQ7L1I2 683 aa12.08□□□□□ -0.47
ACTN1-216ENST00000556083 GPR161Q8N6U8 529 aaKnown RBP12.08□□□□□ -0.47
ACTN1-216ENST00000556083 GOLGA1Q92805 767 aa12.08□□□□□ -0.47
ACTN1-216ENST00000556083 FRMD4BQ9Y2L6 1034 aa12.08□□□□□ -0.47
ACTN1-216ENST00000556083 PDE8AO60658 829 aa12.08□□□□□ -0.48
ACTN1-216ENST00000556083 VAMP4O75379 141 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms