RNA–Protein interactions for RNA: ENST00000554976.5

TDP1-210, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 3,040 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-210ENST00000554976 CWC22Q9HCG8 908 aaKnown RBP10.68□□□□□ -0.7
TDP1-210ENST00000554976 RPS6KB1P23443 525 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 FKBP4Q02790 459 aaKnown RBP eCLIP10.67□□□□□ -0.7
TDP1-210ENST00000554976 PKP1Q13835 747 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 UBE4AQ14139 1066 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 TTF1Q15361 905 aaPredicted RBP10.67□□□□□ -0.7
TDP1-210ENST00000554976 UBE3CQ15386 1083 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 JAKMIP1Q96N16 626 aaKnown RBP10.67□□□□□ -0.7
TDP1-210ENST00000554976 AGXT2Q9BYV1 514 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 ZMYM6O95789 1325 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 NBPF3Q9H094 633 aa10.67□□□□□ -0.7
TDP1-210ENST00000554976 BCAMP50895 628 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 FOXD4L1Q9NU39 408 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 WWC3Q9ULE0 1092 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 FBXO33Q7Z6M2 555 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 NLRP3Q96P20 1036 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 KLRK1P26718 216 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 EXOSC10Q01780 885 aaKnown RBP10.66□□□□□ -0.7
TDP1-210ENST00000554976 FBXL16Q8N461 479 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 PDRG1Q9NUG6 133 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 LIMCH1Q9UPQ0 1083 aa10.66□□□□□ -0.7
TDP1-210ENST00000554976 MCM4P33991 863 aa10.65□□□□□ -0.7
TDP1-210ENST00000554976 RPS8P62241 208 aaKnown RBP10.65□□□□□ -0.7
TDP1-210ENST00000554976 GORABQ5T7V8 394 aa10.65□□□□□ -0.7
TDP1-210ENST00000554976 POTEAQ6S8J7 498 aa10.65□□□□□ -0.7
TDP1-210ENST00000554976 FAM84BQ96KN1 310 aaPredicted RBP10.65□□□□□ -0.7
TDP1-210ENST00000554976 NAV1Q8NEY1 1877 aa10.65□□□□□ -0.7
TDP1-210ENST00000554976 PDE6AP16499 860 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 RXRBP28702 533 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 GRAPQ13588 217 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 RNF20Q5VTR2 975 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 CCDC24Q8N4L8 307 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 GRAPLQ8TC17 118 aaPredicted RBP10.65□□□□□ -0.71
TDP1-210ENST00000554976 ZNF384Q8TF68 577 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 RTN4Q9NQC3 1192 aaKnown RBP10.65□□□□□ -0.71
TDP1-210ENST00000554976 TPCN1Q9ULQ1 816 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 CYP46A1Q9Y6A2 500 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 PNPLA7Q6ZV29 1317 aa10.65□□□□□ -0.71
TDP1-210ENST00000554976 ZKSCAN1P17029 563 aaPredicted RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 ME3Q16798 604 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 C15orf52Q6ZUT6 534 aaKnown RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 ZNF532Q9HCE3 1301 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 BAZ2AQ9UIF9 1905 aaKnown RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 GPAA1O43292 621 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 PSMA5P28066 241 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 HOXA10P31260 410 aaPredicted RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 KRT32Q14532 448 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 LRRFIP1Q32MZ4 808 aaKnown RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 COL23A1Q86Y22 540 aaPredicted RBP10.64□□□□□ -0.71
TDP1-210ENST00000554976 CNBD1Q8NA66 436 aa10.64□□□□□ -0.71
TDP1-210ENST00000554976 BRD1O95696 1058 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 SERPINB2P05120 415 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 ZSCAN25Q6NSZ9 544 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 PSME4Q14997 1843 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 E7EWF7 191 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 ADGRA1Q86SQ6 560 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 NKX2-3Q8TAU0 364 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.63□□□□□ -0.71
TDP1-210ENST00000554976 GYG1P46976 350 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 ALX1Q15699 326 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 SLC9C2Q5TAH2 1124 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 TTLL5Q6EMB2 1281 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 NEK1Q96PY6 1258 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 STRBPQ96SI9 672 aaKnown RBP10.63□□□□□ -0.71
TDP1-210ENST00000554976 ANKRD2Q9GZV1 360 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 EPB41L4AQ9HCS5 686 aaPredicted RBP10.63□□□□□ -0.71
TDP1-210ENST00000554976 TACC3Q9Y6A5 838 aa10.63□□□□□ -0.71
TDP1-210ENST00000554976 SNED1Q8TER0 1413 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 TCHHQ07283 1943 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 SEMA3EO15041 775 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 FGAP02671 866 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 HMGB2P26583 209 aaKnown RBP10.62□□□□□ -0.71
TDP1-210ENST00000554976 EVCP57679 992 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 GLIPR1L2Q4G1C9 344 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 ZSCAN31Q96LW9 406 aaPredicted RBP10.62□□□□□ -0.71
TDP1-210ENST00000554976 SH2B1Q9NRF2 756 aaPredicted RBP10.62□□□□□ -0.71
TDP1-210ENST00000554976 ADAMTSL1Q8N6G6 1762 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 NUCB2P80303 420 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 BLOC1S2Q6QNY1 142 aa10.62□□□□□ -0.71
TDP1-210ENST00000554976 SALL1Q9NSC2 1324 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 MYH2Q9UKX2 1941 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 TXNRD3Q86VQ6 643 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 MB21D2Q8IYB1 491 aaPredicted RBP10.61□□□□□ -0.71
TDP1-210ENST00000554976 CAMKK2Q96RR4 588 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 LARP6Q9BRS8 491 aaKnown RBP10.61□□□□□ -0.71
TDP1-210ENST00000554976 WDR19Q8NEZ3 1342 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 APBA3O96018 575 aa10.61□□□□□ -0.71
TDP1-210ENST00000554976 BAG4O95429 457 aaKnown RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 ANTXR2P58335 489 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 NOL8Q76FK4 1167 aaKnown RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 SLX4Q8IY92 1834 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 KCNJ4P48050 445 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 ANKRD1Q15327 319 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 MAGEB6Q8N7X4 407 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 CRAMP1Q96RY5 1269 aa10.6□□□□□ -0.71
TDP1-210ENST00000554976 RIOK1Q9BRS2 568 aaKnown RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 BRCA1P38398 1863 aaKnown RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 HMGB1P09429 215 aaKnown RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 GTF2E1P29083 439 aaPredicted RBP10.6□□□□□ -0.71
TDP1-210ENST00000554976 DHX32Q7L7V1 743 aaKnown RBP10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms