RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 ZSCAN25Q6NSZ9 544 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 ILDR1Q86SU0 546 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 ZBTB38Q8NAP3 1195 aaPredicted RBP14.32□□□□□ -0.12
SHMT2-207ENST00000553837 DDX11Q96FC9 970 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 PLA2G12BQ9BX93 195 aa14.32□□□□□ -0.12
SHMT2-207ENST00000553837 DISP2A7MBM2 1401 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 MAP3K15Q6ZN16 1313 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 ZBTB22O15209 634 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 CTDNEP1O95476 244 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 HSP90B1P14625 803 aaKnown RBP14.31□□□□□ -0.12
SHMT2-207ENST00000553837 LIG1P18858 919 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 PDCP20941 246 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 MAP3K11Q16584 847 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 KIF6Q6ZMV9 814 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 RNF216Q9NWF9 866 aaPredicted RBP14.31□□□□□ -0.12
SHMT2-207ENST00000553837 FAM53CQ9NYF3 392 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 RIC1Q4ADV7 1423 aa14.31□□□□□ -0.12
SHMT2-207ENST00000553837 E7EWF7 191 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 KRT85P78386 507 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 APOBRQ0VD83 1088 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 HSP90AB3PQ58FF7 597 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 CEP135Q66GS9 1140 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 GIGYF2Q6Y7W6 1299 aaKnown RBP14.3□□□□□ -0.12
SHMT2-207ENST00000553837 DHX32Q7L7V1 743 aaKnown RBP14.3□□□□□ -0.12
SHMT2-207ENST00000553837 CHST3Q7LGC8 479 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 NLRP10Q86W26 655 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.3□□□□□ -0.12
SHMT2-207ENST00000553837 NWD2Q9ULI1 1742 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 PFKFB2O60825 505 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 CYP19A1P11511 503 aaPredicted RBP14.3□□□□□ -0.12
SHMT2-207ENST00000553837 LRMPQ12912 555 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 RESTQ13127 1097 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 SMARCC2Q8TAQ2 1214 aa14.3□□□□□ -0.12
SHMT2-207ENST00000553837 SPEF2Q9C093 1822 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 BCL9O00512 1426 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 PPFIA3O75145 1194 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 STARD3NLO95772 234 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 ZAP70P43403 619 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 ZNF75DP51815 510 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TYRO3Q06418 890 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 NAA30Q147X3 362 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TTC39AQ5SRH9 613 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TEX13AQ9BXU3 409 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 AGXT2Q9BYV1 514 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TRIM5Q9C035 493 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 GREM2Q9H772 168 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 ZBTB1Q9Y2K1 713 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 RIPOR2Q9Y4F9 1068 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 MRVI1Q9Y6F6 885 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 ELP1O95163 1332 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TULP2O00295 520 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 IFIT5Q13325 482 aaKnown RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 PLA2G4DQ86XP0 818 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 NSUN7Q8NE18 718 aaKnown RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 TTLL11Q8NHH1 800 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 LEO1Q8WVC0 666 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 NUP62CLQ9H1M0 184 aa14.29□□□□□ -0.12
SHMT2-207ENST00000553837 NCOA5Q9HCD5 579 aaKnown RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 GPHNQ9NQX3 736 aaPredicted RBP14.29□□□□□ -0.12
SHMT2-207ENST00000553837 LRP6O75581 1613 aa14.28□□□□□ -0.12
SHMT2-207ENST00000553837 KMT5BQ4FZB7 885 aa14.28□□□□□ -0.12
SHMT2-207ENST00000553837 LUZP1Q86V48 1076 aa14.28□□□□□ -0.12
SHMT2-207ENST00000553837 CLGNO14967 610 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 ITGA6P23229 1130 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 FOSBP53539 338 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 CCT2P78371 535 aaKnown RBP14.27□□□□□ -0.12
SHMT2-207ENST00000553837 CCDC158Q5M9N0 1113 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 GORABQ5T7V8 394 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 PGBD1Q96JS3 809 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 PUS7LQ9H0K6 701 aaKnown RBP14.27□□□□□ -0.12
SHMT2-207ENST00000553837 NRBP1Q9UHY1 535 aa14.27□□□□□ -0.12
SHMT2-207ENST00000553837 CAMK4Q16566 473 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 TICAM2Q86XR7 235 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 ZNF592Q92610 1267 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 SPATA32Q96LK8 384 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 CBX8Q9HC52 389 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 FBXO3Q9UK99 471 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 AKAP2Q9Y2D5 859 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 KAT6BQ8WYB5 2073 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 SLIT2O94813 1529 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 CDHR2Q9BYE9 1310 aa14.27□□□□□ -0.13
SHMT2-207ENST00000553837 NEMFO60524 1076 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 HMGB1P09429 215 aaKnown RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 ADD1P35611 737 aaKnown RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 MCAMP43121 646 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 HAND2P61296 217 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 ERO1AQ96HE7 468 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 AKAP11Q9UKA4 1901 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 PTPDC1A2A3K4 754 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 PDIA3P30101 505 aaKnown RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 CDC25BP30305 580 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 CTSWP56202 376 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 WASHC4Q2M389 1173 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 AXDND1Q5T1B0 1012 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 VGLL2Q8N8G2 317 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 TDRD7Q8NHU6 1098 aaKnown RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 SYTL4Q96C24 671 aaPredicted RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 GEMIN8Q9NWZ8 242 aaKnown RBP14.26□□□□□ -0.13
SHMT2-207ENST00000553837 CLIP2Q9UDT6 1046 aa14.26□□□□□ -0.13
SHMT2-207ENST00000553837 TBC1D2BQ9UPU7 963 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms