RNA–Protein interactions for RNA: ENST00000553569.1

TDP1-206, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 879 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-206ENST00000553569 A0A1B0GUL7 405 aa28.2■■■□□ 2.1
TDP1-206ENST00000553569 EGFRP00533 1210 aa28.2■■■□□ 2.1
TDP1-206ENST00000553569 CHAF1AQ13111 956 aaPredicted RBP28.2■■■□□ 2.1
TDP1-206ENST00000553569 HMMRO75330 724 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 HIRAP54198 1017 aaPredicted RBP28.19■■■□□ 2.1
TDP1-206ENST00000553569 TIMM10P62072 90 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 KIF4BQ2VIQ3 1234 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 MAP1SQ66K74 1059 aaPredicted RBP28.19■■■□□ 2.1
TDP1-206ENST00000553569 KIAA0825Q8IV33 1275 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 CERS5Q8N5B7 392 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 CRBNQ96SW2 442 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 EXOC6BQ9Y2D4 811 aa28.19■■■□□ 2.1
TDP1-206ENST00000553569 NOP58Q9Y2X3 529 aaKnown RBP28.19■■■□□ 2.1
TDP1-206ENST00000553569 FAM205AQ6ZU69 1335 aa28.18■■■□□ 2.1
TDP1-206ENST00000553569 ZNF280AP59817 542 aaPredicted RBP28.18■■■□□ 2.1
TDP1-206ENST00000553569 SIRT2Q8IXJ6 389 aa28.18■■■□□ 2.1
TDP1-206ENST00000553569 NEUROD6Q96NK8 337 aa28.17■■■□□ 2.1
TDP1-206ENST00000553569 F8W031 263 aaPredicted RBP28.16■■■□□ 2.1
TDP1-206ENST00000553569 PHKA1P46020 1223 aa28.16■■■□□ 2.1
TDP1-206ENST00000553569 MFSD14BQ5SR56 506 aa28.16■■■□□ 2.1
TDP1-206ENST00000553569 OGFOD1Q8N543 542 aa28.16■■■□□ 2.1
TDP1-206ENST00000553569 XAGE2Q96GT9 111 aa28.15■■■□□ 2.1
TDP1-206ENST00000553569 MYOZ2Q9NPC6 264 aa28.15■■■□□ 2.1
TDP1-206ENST00000553569 COL1A1P02452 1464 aaPredicted RBP28.15■■■□□ 2.1
TDP1-206ENST00000553569 FKBP1AP62942 108 aaKnown RBP28.14■■■□□ 2.1
TDP1-206ENST00000553569 GNL3LQ9NVN8 582 aaKnown RBP28.14■■■□□ 2.1
TDP1-206ENST00000553569 HDAC9Q9UKV0 1011 aa28.14■■■□□ 2.1
TDP1-206ENST00000553569 SUPT16HQ9Y5B9 1047 aaKnown RBP28.14■■■□□ 2.1
TDP1-206ENST00000553569 HSPA6P17066 643 aa28.13■■■□□ 2.09
TDP1-206ENST00000553569 TNNI3KQ59H18 835 aa28.13■■■□□ 2.09
TDP1-206ENST00000553569 CCDC102BQ68D86 513 aa28.13■■■□□ 2.09
TDP1-206ENST00000553569 CNTROBQ8N137 903 aa28.13■■■□□ 2.09
TDP1-206ENST00000553569 FPGT-TNNI3KV9GXZ4 949 aa28.13■■■□□ 2.09
TDP1-206ENST00000553569 APBB1O00213 710 aa28.12■■■□□ 2.09
TDP1-206ENST00000553569 HSP90AB4PQ58FF6 505 aa28.12■■■□□ 2.09
TDP1-206ENST00000553569 GORABQ5T7V8 394 aa28.12■■■□□ 2.09
TDP1-206ENST00000553569 ERC1Q8IUD2 1116 aa28.12■■■□□ 2.09
TDP1-206ENST00000553569 ZC3H15Q8WU90 426 aaKnown RBP28.1■■■□□ 2.09
TDP1-206ENST00000553569 TBC1D22AQ8WUA7 517 aa28.1■■■□□ 2.09
TDP1-206ENST00000553569 GPR108Q9NPR9 543 aa28.1■■■□□ 2.09
TDP1-206ENST00000553569 ASTN2O75129 1339 aaPredicted RBP28.1■■■□□ 2.09
TDP1-206ENST00000553569 SCARF1Q14162 830 aa28.09■■■□□ 2.09
TDP1-206ENST00000553569 GGA3Q9NZ52 723 aa28.09■■■□□ 2.09
TDP1-206ENST00000553569 ITGBL1O95965 494 aaPredicted RBP28.08■■■□□ 2.09
TDP1-206ENST00000553569 GRIK5Q16478 980 aa28.08■■■□□ 2.09
TDP1-206ENST00000553569 PGAP2Q9UHJ9 254 aa28.08■■■□□ 2.09
TDP1-206ENST00000553569 DENND2AQ9ULE3 1009 aa28.08■■■□□ 2.09
TDP1-206ENST00000553569 TTF2Q9UNY4 1162 aaKnown RBP28.08■■■□□ 2.09
TDP1-206ENST00000553569 POLR2AP24928 1970 aaKnown RBP28.08■■■□□ 2.09
TDP1-206ENST00000553569 MMP14P50281 582 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 WDR66Q8TBY9 1149 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 RHPN1Q8TCX5 695 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 DBNDD2Q9BQY9 259 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 GLIS2Q9BZE0 524 aaPredicted RBP28.07■■■□□ 2.08
TDP1-206ENST00000553569 BCL11AQ9H165 835 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 IL1RAPL2Q9NP60 686 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 PASKQ96RG2 1323 aa28.07■■■□□ 2.08
TDP1-206ENST00000553569 TRAF5O00463 557 aa28.06■■■□□ 2.08
TDP1-206ENST00000553569 SEMA3EO15041 775 aa28.06■■■□□ 2.08
TDP1-206ENST00000553569 RASGRF1Q13972 1273 aa28.06■■■□□ 2.08
TDP1-206ENST00000553569 NBPF9Q3BBW0 867 aa28.06■■■□□ 2.08
TDP1-206ENST00000553569 DCPSQ96C86 337 aaKnown RBP28.06■■■□□ 2.08
TDP1-206ENST00000553569 PCDHB15Q9Y5E8 787 aa28.06■■■□□ 2.08
TDP1-206ENST00000553569 APLP1P51693 650 aa28.05■■■□□ 2.08
TDP1-206ENST00000553569 RBM5P52756 815 aaKnown RBP eCLIP28.05■■■□□ 2.08
TDP1-206ENST00000553569 FMR1Q06787 632 aaKnown RBP eCLIP28.05■■■□□ 2.08
TDP1-206ENST00000553569 DLGAP5Q15398 846 aa28.05■■■□□ 2.08
TDP1-206ENST00000553569 CFAP100Q494V2 611 aa28.05■■■□□ 2.08
TDP1-206ENST00000553569 ANGEL2Q5VTE6 544 aaKnown RBP28.05■■■□□ 2.08
TDP1-206ENST00000553569 EAF2Q96CJ1 260 aaPredicted RBP28.05■■■□□ 2.08
TDP1-206ENST00000553569 KIF1BPQ96EK5 621 aa28.05■■■□□ 2.08
TDP1-206ENST00000553569 CCDC8Q9H0W5 538 aaPredicted RBP28.05■■■□□ 2.08
TDP1-206ENST00000553569 TLR7Q9NYK1 1049 aaKnown RBP28.05■■■□□ 2.08
TDP1-206ENST00000553569 PCDHAC2Q9Y5I4 1007 aa28.05■■■□□ 2.08
TDP1-206ENST00000553569 WNT10BO00744 389 aa28.04■■■□□ 2.08
TDP1-206ENST00000553569 AACSQ86V21 672 aa28.04■■■□□ 2.08
TDP1-206ENST00000553569 RAB11FIP3O75154 756 aa28.03■■■□□ 2.08
TDP1-206ENST00000553569 HTRA3P83110 453 aa28.03■■■□□ 2.08
TDP1-206ENST00000553569 TTC39AQ5SRH9 613 aa28.03■■■□□ 2.08
TDP1-206ENST00000553569 KRT26Q7Z3Y9 468 aa28.03■■■□□ 2.08
TDP1-206ENST00000553569 USP48Q86UV5 1035 aa28.03■■■□□ 2.08
TDP1-206ENST00000553569 DBNLQ9UJU6 430 aaKnown RBP28.03■■■□□ 2.08
TDP1-206ENST00000553569 TRPM7Q96QT4 1865 aa28.02■■■□□ 2.08
TDP1-206ENST00000553569 ECM29Q5VYK3 1845 aa28.02■■■□□ 2.08
TDP1-206ENST00000553569 ADM5C9JUS6 153 aa28.02■■■□□ 2.08
TDP1-206ENST00000553569 ARID4AP29374 1257 aaPredicted RBP28.02■■■□□ 2.08
TDP1-206ENST00000553569 CDC37L1Q7L3B6 337 aa28.02■■■□□ 2.08
TDP1-206ENST00000553569 CCDC158Q5M9N0 1113 aa28.01■■■□□ 2.07
TDP1-206ENST00000553569 PI16Q6UXB8 463 aa28.01■■■□□ 2.07
TDP1-206ENST00000553569 SULF1Q8IWU6 871 aa28.01■■■□□ 2.07
TDP1-206ENST00000553569 EXOC6Q8TAG9 804 aa28.01■■■□□ 2.07
TDP1-206ENST00000553569 ZBED3Q96IU2 234 aaPredicted RBP28.01■■■□□ 2.07
TDP1-206ENST00000553569 SCAF8Q9UPN6 1271 aaKnown RBP28.01■■■□□ 2.07
TDP1-206ENST00000553569 MAST3O60307 1309 aa28■■■□□ 2.07
TDP1-206ENST00000553569 UQCRFS1P1P0C7P4 283 aa28■■■□□ 2.07
TDP1-206ENST00000553569 CRKP46108 304 aa28■■■□□ 2.07
TDP1-206ENST00000553569 DLK2Q6UY11 383 aa28■■■□□ 2.07
TDP1-206ENST00000553569 CLASRPQ8N2M8 674 aaKnown RBP28■■■□□ 2.07
TDP1-206ENST00000553569 MTMR14Q8NCE2 650 aa28■■■□□ 2.07
TDP1-206ENST00000553569 HMG20BQ9P0W2 317 aa28■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 91.8 ms