RNA–Protein interactions for RNA: ENST00000552338.5

LIMA1-211, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 555 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-211ENST00000552338 RASGRF1Q13972 1273 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 SCARF1Q14162 830 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 TTF1Q15361 905 aaPredicted RBP11.66□□□□□ -0.54
LIMA1-211ENST00000552338 SPATA5Q8NB90 893 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 BOLA2Q9H3K6 86 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 BCS1LQ9Y276 419 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 SUGT1Q9Y2Z0 365 aa11.66□□□□□ -0.54
LIMA1-211ENST00000552338 COL1A1P02452 1464 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-211ENST00000552338 CYP2E1P05181 493 aaPredicted RBP11.65□□□□□ -0.54
LIMA1-211ENST00000552338 SDSP20132 328 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 IARSP41252 1262 aaKnown RBP11.65□□□□□ -0.54
LIMA1-211ENST00000552338 CNTROBQ8N137 903 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 KBTBD3Q8NAB2 608 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 WDR66Q8TBY9 1149 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 MRIQ9BWK5 157 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 TAOK3Q9H2K8 898 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 PAG1Q9NWQ8 432 aa11.65□□□□□ -0.54
LIMA1-211ENST00000552338 ZAP70P43403 619 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 MMP14P50281 582 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 STRIP1Q5VSL9 837 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 TSHZ3Q63HK5 1081 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 VPS37DQ86XT2 251 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 ZGPATQ8N5A5 531 aaKnown RBP11.64□□□□□ -0.55
LIMA1-211ENST00000552338 TBC1D22AQ8WUA7 517 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 SNRKQ9NRH2 765 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 COL4A5P29400 1685 aa11.64□□□□□ -0.55
LIMA1-211ENST00000552338 YBX3P16989 372 aaKnown RBP eCLIP11.63□□□□□ -0.55
LIMA1-211ENST00000552338 AOC3Q16853 763 aa11.63□□□□□ -0.55
LIMA1-211ENST00000552338 KLHL34Q8N239 644 aa11.63□□□□□ -0.55
LIMA1-211ENST00000552338 MAST2Q6P0Q8 1798 aa11.63□□□□□ -0.55
LIMA1-211ENST00000552338 FZD9O00144 591 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 HIP1O00291 1037 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 PPIP5K2O43314 1243 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 EPB41L2O43491 1005 aaKnown RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 ECE2O60344 883 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 GRIN3BO60391 1043 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 ZFYP08048 801 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 VIL1P09327 827 aaKnown RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 PRELPP51888 382 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 UBE3CQ15386 1083 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 LRRFIP1Q32MZ4 808 aaKnown RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 GPR101Q96P66 508 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 ANTXR1Q9H6X2 564 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 ZNF219Q9P2Y4 722 aaPredicted RBP11.62□□□□□ -0.55
LIMA1-211ENST00000552338 ZNRF3Q9ULT6 936 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 MYH2Q9UKX2 1941 aa11.62□□□□□ -0.55
LIMA1-211ENST00000552338 YDJCA8MPS7 323 aa11.61□□□□□ -0.55
LIMA1-211ENST00000552338 RIMBP2O15034 1052 aa11.61□□□□□ -0.55
LIMA1-211ENST00000552338 EIF5BO60841 1220 aaKnown RBP11.61□□□□□ -0.55
LIMA1-211ENST00000552338 CHMLP26374 656 aa11.61□□□□□ -0.55
LIMA1-211ENST00000552338 SPTY2D1Q68D10 685 aaPredicted RBP11.61□□□□□ -0.55
LIMA1-211ENST00000552338 TTLL5Q6EMB2 1281 aa11.61□□□□□ -0.55
LIMA1-211ENST00000552338 ZSCAN25Q6NSZ9 544 aa11.61□□□□□ -0.55
LIMA1-211ENST00000552338 ZNF277Q9NRM2 450 aaPredicted RBP11.61□□□□□ -0.55
LIMA1-211ENST00000552338 MYO3BQ8WXR4 1341 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 ZC3H4Q9UPT8 1303 aaKnown RBP11.6□□□□□ -0.55
LIMA1-211ENST00000552338 TCRBV5S4A2TA0A5A2 114 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 USP17L3A6NCW0 530 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 USP17L4A6NCW7 530 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 GOLIM4O00461 696 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 LMNB1P20700 586 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 ADD2P35612 726 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 HDLBPQ00341 1268 aaKnown RBP11.6□□□□□ -0.55
LIMA1-211ENST00000552338 C8orf34Q49A92 452 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 DACT2Q5SW24 774 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 PI16Q6UXB8 463 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 USP17L1Q7RTZ2 530 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 LARGE2Q8N3Y3 721 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 EDC3Q96F86 508 aaKnown RBP11.6□□□□□ -0.55
LIMA1-211ENST00000552338 GMLQ99445 158 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 DBNDD1Q9H9R9 158 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 PIH1D3Q9NQM4 214 aaKnown RBP11.6□□□□□ -0.55
LIMA1-211ENST00000552338 RAD50Q92878 1312 aa11.6□□□□□ -0.55
LIMA1-211ENST00000552338 TRIM6-TRIM34B2RNG4 842 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 CDC45O75419 566 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 MAP3K12Q12852 859 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 DOK7Q18PE1 504 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 ZMYM1Q5SVZ6 1142 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 NIM1KQ8IY84 436 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 AGBL3Q8NEM8 1001 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 ZNF384Q8TF68 577 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 JDP2Q8WYK2 163 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 RILPL2Q969X0 211 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 NSUN4Q96CB9 384 aaKnown RBP11.59□□□□□ -0.55
LIMA1-211ENST00000552338 DNAJC2Q99543 621 aaKnown RBP11.59□□□□□ -0.55
LIMA1-211ENST00000552338 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.59□□□□□ -0.55
LIMA1-211ENST00000552338 HELLSQ9NRZ9 838 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 NDUFB9Q9Y6M9 179 aa11.59□□□□□ -0.55
LIMA1-211ENST00000552338 G3V3G9 751 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 RNF113AO15541 343 aaKnown RBP11.58□□□□□ -0.56
LIMA1-211ENST00000552338 FRAT2O75474 233 aaPredicted RBP11.58□□□□□ -0.56
LIMA1-211ENST00000552338 GTF2IP78347 998 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 RASSF7Q02833 373 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 MFSD14BQ5SR56 506 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 DCAF8Q5TAQ9 597 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 TBC1D9Q6ZT07 1266 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 ARHGAP27Q6ZUM4 889 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 ERICH6Q7L0X2 663 aa11.58□□□□□ -0.56
LIMA1-211ENST00000552338 CERS5Q8N5B7 392 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms