RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 SNAP47Q5SQN1 464 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 GOLM1Q8NBJ4 401 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 ASAP3Q8TDY4 903 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 ZNF837Q96EG3 531 aaPredicted RBP9.18□□□□□ -0.94
LIMA1-210ENST00000552045 PBX4Q9BYU1 374 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 RASSF4Q9H2L5 321 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 UBP1Q9NZI7 540 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 TBX22Q9Y458 520 aa9.18□□□□□ -0.94
LIMA1-210ENST00000552045 J3QW42 95 aa9.17□□□□□ -0.94
LIMA1-210ENST00000552045 TFE3P19532 575 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-210ENST00000552045 FGFR3P22607 806 aa9.17□□□□□ -0.94
LIMA1-210ENST00000552045 RPS26P62854 115 aaKnown RBP9.17□□□□□ -0.94
LIMA1-210ENST00000552045 FAAP100Q0VG06 881 aa9.17□□□□□ -0.94
LIMA1-210ENST00000552045 NFE2L2Q16236 605 aa9.17□□□□□ -0.94
LIMA1-210ENST00000552045 ZNF746Q6NUN9 644 aaPredicted RBP9.17□□□□□ -0.94
LIMA1-210ENST00000552045 GTPBP3Q969Y2 492 aaKnown RBP9.17□□□□□ -0.94
LIMA1-210ENST00000552045 PAGE1O75459 146 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 NCLP19338 710 aaKnown RBP9.16□□□□□ -0.94
LIMA1-210ENST00000552045 ETFBP38117 255 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 ATP11AP98196 1134 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 MLLT1Q03111 559 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-210ENST00000552045 APOBRQ0VD83 1088 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 SERINC3Q13530 473 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 SDE2Q6IQ49 451 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 HFE2Q6ZVN8 426 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 GPN3Q9UHW5 284 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-210ENST00000552045 PHF24Q9UPV7 400 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 CDK11AQ9UQ88 783 aaPredicted RBP9.16□□□□□ -0.94
LIMA1-210ENST00000552045 MRVI1Q9Y6F6 885 aa9.16□□□□□ -0.94
LIMA1-210ENST00000552045 ITGA6P23229 1130 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 CRKP46108 304 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 PCSK7Q16549 785 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 PCNX4Q63HM2 1172 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 FAM196AQ6ZSG2 479 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 ANKS3Q6ZW76 656 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 SLITRK4Q8IW52 837 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 TRIM42Q8IWZ5 723 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 NKD1Q969G9 470 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 MUC3BQ9H195 1237 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 TMEM39AQ9NV64 488 aa9.15□□□□□ -0.94
LIMA1-210ENST00000552045 ROBO2Q9HCK4 1378 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 ANKRD62A6NC57 917 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 K7ELQ4 463 aaPredicted RBP9.14□□□□□ -0.95
LIMA1-210ENST00000552045 GHRHP01286 108 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 CPLX3Q8WVH0 158 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 MKL1Q969V6 931 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 POP1Q99575 1024 aaKnown RBP9.14□□□□□ -0.95
LIMA1-210ENST00000552045 DNAJB12Q9NXW2 375 aaKnown RBP9.14□□□□□ -0.95
LIMA1-210ENST00000552045 PRR12Q9ULL5 1215 aa9.14□□□□□ -0.95
LIMA1-210ENST00000552045 CTBSQ01459 385 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 ZNF662Q6ZS27 426 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 CCDC84Q86UT8 332 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-210ENST00000552045 NLGN1Q8N2Q7 840 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 BSNDQ8WZ55 320 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 MRFAP1L1Q96HT8 127 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 RBSNQ9H1K0 784 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 CLEC4MQ9H2X3 399 aaPredicted RBP9.13□□□□□ -0.95
LIMA1-210ENST00000552045 IGFLR1Q9H665 355 aa9.13□□□□□ -0.95
LIMA1-210ENST00000552045 PPM1GO15355 546 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 KLF4O43474 513 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 SMNDC1O75940 238 aaKnown RBP eCLIP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 F13A1P00488 732 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 CDK11BP21127 795 aaKnown RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 ZNF157P51786 506 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 PPP2R3AQ06190 1150 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 BNC2Q6ZN30 1099 aaPredicted RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 SYT9Q86SS6 491 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 JAZF1Q86VZ6 243 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 SRRTQ9BXP5 876 aaKnown RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 LRRC3Q9BY71 257 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 UBE2OQ9C0C9 1292 aaKnown RBP9.12□□□□□ -0.95
LIMA1-210ENST00000552045 SIRPGQ9P1W8 387 aa9.12□□□□□ -0.95
LIMA1-210ENST00000552045 EIF2AK2P19525 551 aaKnown RBP9.11□□□□□ -0.95
LIMA1-210ENST00000552045 LMNB1P20700 586 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 BMP6P22004 513 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 SEZ6Q53EL9 994 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 EGFLAMQ63HQ2 1017 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 CEP135Q66GS9 1140 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 ZNF787Q6DD87 383 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 ANAPC16Q96DE5 110 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 TRIM55Q9BYV6 548 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 PRKAG3Q9UGI9 489 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 SAMM50Q9Y512 469 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 PCDHB5Q9Y5E4 795 aa9.11□□□□□ -0.95
LIMA1-210ENST00000552045 PCDH1Q08174 1060 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 TBC1D8BQ0IIM8 1120 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 RAB33AQ14088 237 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 RASIP1Q5U651 963 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 ZNF468Q5VIY5 522 aaPredicted RBP9.1□□□□□ -0.95
LIMA1-210ENST00000552045 FBXO27Q8NI29 283 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 HNRNPLLQ8WVV9 542 aaKnown RBP9.1□□□□□ -0.95
LIMA1-210ENST00000552045 GATAD2BQ8WXI9 593 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 SHDQ96IW2 340 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 TRERF1Q96PN7 1200 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 MIR1-1HGQ9H1L0 117 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 CYP8B1Q9UNU6 501 aa9.1□□□□□ -0.95
LIMA1-210ENST00000552045 FAM221AA4D161 298 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 TLR3O15455 904 aaKnown RBP9.09□□□□□ -0.95
LIMA1-210ENST00000552045 SIN3BO75182 1162 aa9.09□□□□□ -0.95
LIMA1-210ENST00000552045 B3GALT4O96024 378 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms