RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 NKX2-3Q8TAU0 364 aa18.46■□□□□ 0.55
LDLR-204ENST00000545707 FMR1NBQ8N0W7 255 aaPredicted RBP18.45■□□□□ 0.54
LDLR-204ENST00000545707 PDCL2Q8N4E4 241 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 KIF1AQ12756 1690 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 GOLGA8BA8MQT2 603 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 CIAO1O76071 339 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 CAVIN2O95810 425 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 ANTXR2P58335 489 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 SF3A1Q15459 793 aaKnown RBP18.45■□□□□ 0.54
LDLR-204ENST00000545707 IMMTQ16891 758 aaKnown RBP18.45■□□□□ 0.54
LDLR-204ENST00000545707 SARM1Q6SZW1 724 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 MRPS27Q92552 414 aaKnown RBP18.45■□□□□ 0.54
LDLR-204ENST00000545707 C8orf76Q96K31 380 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 ANO10Q9NW15 660 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 HPS5Q9UPZ3 1129 aa18.45■□□□□ 0.54
LDLR-204ENST00000545707 BIN1O00499 593 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 CTIFO43310 598 aaKnown RBP18.44■□□□□ 0.54
LDLR-204ENST00000545707 STK38Q15208 465 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 LINC00301Q8NCQ3 95 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 PRDM11Q9NQV5 511 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 TRMT1Q9NXH9 659 aaKnown RBP18.44■□□□□ 0.54
LDLR-204ENST00000545707 ORC3Q9UBD5 711 aaPredicted RBP18.44■□□□□ 0.54
LDLR-204ENST00000545707 SPATA31A3Q5VYP0 1347 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 KIF28PB7ZC32 967 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 CDC25BP30305 580 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 TAF7LQ5H9L4 462 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 MRFAP1L1Q96HT8 127 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 RTEL1Q9NZ71 1219 aa18.44■□□□□ 0.54
LDLR-204ENST00000545707 SKILP12757 684 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 U2AF2P26368 475 aaKnown RBP eCLIP18.43■□□□□ 0.543e-6■■■□□ 15.4
LDLR-204ENST00000545707 TNS3Q68CZ2 1445 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 PCDH11XQ9BZA7 1347 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 PCDH11YQ9BZA8 1340 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 RXRAP19793 462 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 DPCR1Q3MIW9 517 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 ADALQ6DHV7 355 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 ISM2Q6H9L7 571 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 AIFM3Q96NN9 605 aa18.43■□□□□ 0.54
LDLR-204ENST00000545707 CCDC69A6NI79 296 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 NCBP1Q09161 790 aaKnown RBP18.42■□□□□ 0.54
LDLR-204ENST00000545707 ATL3Q6DD88 541 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 MB21D2Q8IYB1 491 aaPredicted RBP18.42■□□□□ 0.54
LDLR-204ENST00000545707 CEP57L1Q8IYX8 460 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 ANKRD7Q92527 254 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 ISCA1Q9BUE6 129 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 ERVV-2B6SEH9 535 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 CPLX1O14810 134 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 GPAA1O43292 621 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 TCIRG1Q13488 830 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 FBXO18Q8NFZ0 1043 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 ATG3Q9NT62 314 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 CTNNA3Q9UI47 895 aa18.42■□□□□ 0.54
LDLR-204ENST00000545707 SMTNL1A8MU46 457 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 GPTP24298 496 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 EVCP57679 992 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 STRN4Q9NRL3 753 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 ZNF213O14771 459 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 MYSM1Q5VVJ2 828 aa18.41■□□□□ 0.54
LDLR-204ENST00000545707 RALYLQ86SE5 291 aaKnown RBP18.41■□□□□ 0.54
LDLR-204ENST00000545707 SPTLC2O15270 562 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 MARCKSP29966 332 aaPredicted RBP18.4■□□□□ 0.54
LDLR-204ENST00000545707 CEP135Q66GS9 1140 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.4■□□□□ 0.54
LDLR-204ENST00000545707 APPBP2Q92624 585 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 KIAA1468Q9P260 1216 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 ADAMTSL3P82987 1691 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 TJP1Q07157 1748 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 MCAMP43121 646 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 CCZ1BP86790 482 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 CCZ1P86791 482 aaPredicted RBP18.4■□□□□ 0.54
LDLR-204ENST00000545707 IFIT5Q13325 482 aaKnown RBP18.4■□□□□ 0.54
LDLR-204ENST00000545707 NBPF11Q86T75 865 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 NCOA7Q8NI08 942 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 AKAP2Q9Y2D5 859 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 WDR17Q8IZU2 1322 aa18.4■□□□□ 0.54
LDLR-204ENST00000545707 CCDC112Q8NEF3 446 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 NBPF3Q9H094 633 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 SENP2Q9HC62 589 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 INCENPQ9NQS7 918 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 NEDD4P46934 1319 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 PKD1L3Q7Z443 1732 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 METTL24Q5JXM2 366 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 SYNE3Q6ZMZ3 975 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 DNAJC10Q8IXB1 793 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 SYTL4Q96C24 671 aaPredicted RBP18.39■□□□□ 0.53
LDLR-204ENST00000545707 ASAP1Q9ULH1 1129 aa18.39■□□□□ 0.53
LDLR-204ENST00000545707 KCPQ6ZWJ8 1503 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 A0A1W2PQ27 194 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 A0A1W2PQ64 194 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 A0A1W2PQD8 194 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 ZFYP08048 801 aaPredicted RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 RBM6P78332 1123 aaKnown RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 CADPS2Q86UW7 1296 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 SMAP1Q8IYB5 467 aaPredicted RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 FBXL16Q8N461 479 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 NOL12Q9UGY1 213 aaKnown RBP eCLIP18.38■□□□□ 0.53
LDLR-204ENST00000545707 V9GYY5 206 aaPredicted RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 WDHD1O75717 1129 aaPredicted RBP18.38■□□□□ 0.53
LDLR-204ENST00000545707 ZNF202O95125 648 aa18.38■□□□□ 0.53
LDLR-204ENST00000545707 APPP05067 770 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms