RNA–Protein interactions for RNA: ENST00000545440.5

SNHG1-223, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2 BASIC

Gene SNHG1, Length 754 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-223ENST00000545440 C7orf43Q8WVR3 580 aa9.91□□□□□ -0.82
SNHG1-223ENST00000545440 RPGRQ92834 1020 aaKnown RBP9.91□□□□□ -0.82
SNHG1-223ENST00000545440 UTP14AQ9BVJ6 771 aaKnown RBP9.91□□□□□ -0.82
SNHG1-223ENST00000545440 CHMP4AQ9BY43 222 aa9.91□□□□□ -0.82
SNHG1-223ENST00000545440 HOXA10P31260 410 aaPredicted RBP9.9□□□□□ -0.82
SNHG1-223ENST00000545440 NLRP10Q86W26 655 aa9.9□□□□□ -0.82
SNHG1-223ENST00000545440 PNMA1Q8ND90 353 aa9.9□□□□□ -0.82
SNHG1-223ENST00000545440 NMRK2Q9NPI5 230 aa9.9□□□□□ -0.82
SNHG1-223ENST00000545440 SH3TC1Q8TE82 1336 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 A0A1B0GUL6 1792 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 ADAMTSL1Q8N6G6 1762 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 SENP3-EIF4A1A0A087X0R7 540 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 A6NJR5 290 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 TOMM70O94826 608 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 GUCA2AQ02747 115 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 SLC10A5Q5PT55 438 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 CC2D2BQ6DHV5 1058 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 RTKN2Q8IZC4 609 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 C8orf58Q8NAV2 365 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 CRAMP1Q96RY5 1269 aa9.89□□□□□ -0.83
SNHG1-223ENST00000545440 DUOX1Q9NRD9 1551 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 COL4A5P29400 1685 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 GLTPD2A6NH11 291 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 FKBP4Q02790 459 aaKnown RBP eCLIP9.88□□□□□ -0.83
SNHG1-223ENST00000545440 RTL5Q5HYW3 569 aaPredicted RBP9.88□□□□□ -0.83
SNHG1-223ENST00000545440 MORN1Q5T089 497 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 CCDC30Q5VVM6 783 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 RETREG3Q86VR2 466 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 TSR2Q969E8 191 aaKnown RBP9.88□□□□□ -0.83
SNHG1-223ENST00000545440 KCTD12Q96CX2 325 aaKnown RBP9.88□□□□□ -0.83
SNHG1-223ENST00000545440 RBM17Q96I25 401 aaKnown RBP9.88□□□□□ -0.83
SNHG1-223ENST00000545440 NLRP3Q96P20 1036 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 ISCA1Q9BUE6 129 aa9.88□□□□□ -0.83
SNHG1-223ENST00000545440 FANCIQ9NVI1 1328 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 COL4A1P02462 1669 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 ELL2O00472 640 aaPredicted RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 PPEF1O14829 653 aaPredicted RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 FMNL1O95466 1100 aaPredicted RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 TRIM28Q13263 835 aaKnown RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 PUS10Q3MIT2 529 aaKnown RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 WDR63Q8IWG1 891 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 CDAN1Q8IWY9 1227 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 TSPYL6Q8N831 410 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 PSMD1Q99460 953 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 TRMT112Q9UI30 125 aaKnown RBP9.87□□□□□ -0.83
SNHG1-223ENST00000545440 PCDHGC3Q9UN70 934 aa9.87□□□□□ -0.83
SNHG1-223ENST00000545440 ABCC4O15439 1325 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 DDX58O95786 925 aaKnown RBP9.86□□□□□ -0.83
SNHG1-223ENST00000545440 USP17L8P0C7I0 530 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 HSPA6P17066 643 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 TWISTNBQ3B726 338 aaPredicted RBP9.86□□□□□ -0.83
SNHG1-223ENST00000545440 OLFM4Q6UX06 510 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 C16orf71Q8IYS4 520 aaPredicted RBP9.86□□□□□ -0.83
SNHG1-223ENST00000545440 TRPM7Q96QT4 1865 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 STK31Q9BXU1 1019 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 PHAXQ9H814 394 aaKnown RBP9.86□□□□□ -0.83
SNHG1-223ENST00000545440 SLC27A5Q9Y2P5 690 aa9.86□□□□□ -0.83
SNHG1-223ENST00000545440 ATP5J2-PTCD1G3V325 749 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 HCLS1P14317 486 aaPredicted RBP9.85□□□□□ -0.83
SNHG1-223ENST00000545440 VEGFAP15692 232 aaPredicted RBP9.85□□□□□ -0.83
SNHG1-223ENST00000545440 IARSP41252 1262 aaKnown RBP9.85□□□□□ -0.83
SNHG1-223ENST00000545440 FSTL1Q12841 308 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 POTEGQ6S5H5 508 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 THSD4Q6ZMP0 1018 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 PRR7Q8TB68 274 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 HLA-CQ95604 372 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 RRAGCQ9HB90 399 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 ZNF277Q9NRM2 450 aaPredicted RBP9.85□□□□□ -0.83
SNHG1-223ENST00000545440 SALL2Q9Y467 1007 aaPredicted RBP9.85□□□□□ -0.83
SNHG1-223ENST00000545440 ATP6V0A2Q9Y487 856 aa9.85□□□□□ -0.83
SNHG1-223ENST00000545440 SCN9AQ15858 1988 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 ZNF646O15015 1829 aaPredicted RBP9.84□□□□□ -0.83
SNHG1-223ENST00000545440 HSP90B1P14625 803 aaKnown RBP9.84□□□□□ -0.83
SNHG1-223ENST00000545440 APLP1P51693 650 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 DDX46Q7L014 1031 aaKnown RBP9.84□□□□□ -0.83
SNHG1-223ENST00000545440 TMC4Q7Z404 712 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 FAM9BQ8IZU0 186 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 SYNE4Q8N205 404 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 CCDC191Q8NCU4 936 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 METTL22Q9BUU2 404 aaPredicted RBP9.84□□□□□ -0.83
SNHG1-223ENST00000545440 TMX4Q9H1E5 349 aaPredicted RBP9.84□□□□□ -0.83
SNHG1-223ENST00000545440 SNRKQ9NRH2 765 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 WBP1LQ9NX94 342 aa9.84□□□□□ -0.83
SNHG1-223ENST00000545440 POTEMA6NI47 508 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 BBOX1O75936 387 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 GRAPQ13588 217 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 SF3B3Q15393 1217 aaKnown RBP9.83□□□□□ -0.84
SNHG1-223ENST00000545440 KSR2Q6VAB6 950 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 ZBTB38Q8NAP3 1195 aaPredicted RBP9.83□□□□□ -0.84
SNHG1-223ENST00000545440 SMC1BQ8NDV3 1235 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 GRAPLQ8TC17 118 aaPredicted RBP9.83□□□□□ -0.84
SNHG1-223ENST00000545440 CLUAP1Q96AJ1 413 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 FAM89AQ96GI7 184 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 MYD88Q99836 296 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 USB1Q9BQ65 265 aaKnown RBP9.83□□□□□ -0.84
SNHG1-223ENST00000545440 KRTAP3-3Q9BYR6 98 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 KRTAP3-2Q9BYR7 98 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 MYH16Q9H6N6 1097 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 NDUFB9Q9Y6M9 179 aa9.83□□□□□ -0.84
SNHG1-223ENST00000545440 ZNF521Q96K83 1311 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms