RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 EIF5P55010 431 aaKnown RBP21.18■□□□□ 0.98
VIM-209ENST00000544301 TNMDQ9H2S6 317 aa21.18■□□□□ 0.98
VIM-209ENST00000544301 PIH1D3Q9NQM4 214 aaKnown RBP21.18■□□□□ 0.98
VIM-209ENST00000544301 PRC1O43663 620 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 PRKCSHP14314 528 aaPredicted RBP21.17■□□□□ 0.98
VIM-209ENST00000544301 SLC9C2Q5TAH2 1124 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 CCDC102BQ68D86 513 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 INTS5Q6P9B9 1019 aaKnown RBP21.17■□□□□ 0.98
VIM-209ENST00000544301 AK7Q96M32 723 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 CLSTN2Q9H4D0 955 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 LRP5O75197 1615 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 ZNF213O14771 459 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 NR1I2O75469 434 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 ARID4AP29374 1257 aaPredicted RBP21.17■□□□□ 0.98
VIM-209ENST00000544301 PHKA1P46020 1223 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 BICD2Q8TD16 824 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 CDCA7Q9BWT1 371 aaPredicted RBP21.17■□□□□ 0.98
VIM-209ENST00000544301 ATRNO75882 1429 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 MYH15Q9Y2K3 1946 aa21.17■□□□□ 0.98
VIM-209ENST00000544301 PPFIA3O75145 1194 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 TYRO3Q06418 890 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 RBM43Q6ZSC3 357 aaKnown RBP21.16■□□□□ 0.98
VIM-209ENST00000544301 NCOA7Q8NI08 942 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 MRVI1Q9Y6F6 885 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 MROH5Q6ZUA9 1318 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 CARMIL3Q8ND23 1372 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 FDPSP14324 419 aaKnown RBP21.16■□□□□ 0.98
VIM-209ENST00000544301 FGFR2P21802 821 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 ANTXR2P58335 489 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 PUM3Q15397 648 aaKnown RBP21.16■□□□□ 0.98
VIM-209ENST00000544301 SUSD4Q5VX71 490 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.16■□□□□ 0.98
VIM-209ENST00000544301 CKAP2LQ8IYA6 745 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 LPIN2Q92539 896 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 CCDC87Q9NVE4 849 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 RCOR1Q9UKL0 485 aa21.16■□□□□ 0.98
VIM-209ENST00000544301 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.16■□□□□ 0.985e-10■■□□□ 11.7
VIM-209ENST00000544301 UQCRFS1P1P0C7P4 283 aa21.15■□□□□ 0.98
VIM-209ENST00000544301 UBE3CQ15386 1083 aa21.15■□□□□ 0.98
VIM-209ENST00000544301 HELBQ8NG08 1087 aaPredicted RBP21.15■□□□□ 0.98
VIM-209ENST00000544301 SPATA31A1Q5TZJ5 1347 aa21.15■□□□□ 0.98
VIM-209ENST00000544301 AP5Z1O43299 807 aa21.14■□□□□ 0.98
VIM-209ENST00000544301 IDH1O75874 414 aaKnown RBP21.14■□□□□ 0.98
VIM-209ENST00000544301 CEBPZQ03701 1054 aaKnown RBP21.14■□□□□ 0.98
VIM-209ENST00000544301 RALYLQ86SE5 291 aaKnown RBP21.14■□□□□ 0.98
VIM-209ENST00000544301 KLF18A0A0U1RQI7 1052 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 CRKLP46109 303 aaKnown RBP21.14■□□□□ 0.97
VIM-209ENST00000544301 DDB1Q16531 1140 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 ATL3Q6DD88 541 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 FAM200AQ8TCP9 573 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 NBPF3Q9H094 633 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 HPS5Q9UPZ3 1129 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 WDR19Q8NEZ3 1342 aa21.14■□□□□ 0.97
VIM-209ENST00000544301 DDX60Q8IY21 1712 aaKnown RBP21.14■□□□□ 0.97
VIM-209ENST00000544301 MYO5AQ9Y4I1 1855 aaKnown RBP21.13■□□□□ 0.97
VIM-209ENST00000544301 GUCY1B3Q02153 619 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 FTOQ9C0B1 505 aaKnown RBP eCLIP21.13■□□□□ 0.97
VIM-209ENST00000544301 THRAP3Q9Y2W1 955 aaKnown RBP21.13■□□□□ 0.97
VIM-209ENST00000544301 ZNF532Q9HCE3 1301 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 PDE6AP16499 860 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 ATP6V1AP38606 617 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 ILDR1Q86SU0 546 aaPredicted RBP21.13■□□□□ 0.97
VIM-209ENST00000544301 ACSBG1Q96GR2 724 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 ZNF396Q96N95 335 aaPredicted RBP21.13■□□□□ 0.97
VIM-209ENST00000544301 USP28Q96RU2 1077 aa21.13■□□□□ 0.97
VIM-209ENST00000544301 ARAP2Q8WZ64 1704 aa21.12■□□□□ 0.97
VIM-209ENST00000544301 TCRBV5S4A2TA0A5A2 114 aa21.12■□□□□ 0.97
VIM-209ENST00000544301 GOLGA8BA8MQT2 603 aa21.12■□□□□ 0.97
VIM-209ENST00000544301 ADAMTS2O95450 1211 aa21.12■□□□□ 0.97
VIM-209ENST00000544301 UTP14AQ9BVJ6 771 aaKnown RBP21.12■□□□□ 0.97
VIM-209ENST00000544301 WWC3Q9ULE0 1092 aa21.12■□□□□ 0.97
VIM-209ENST00000544301 A0A0G2JS52 829 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 DHX16O60231 1041 aaKnown RBP21.11■□□□□ 0.97
VIM-209ENST00000544301 PLCB2Q00722 1185 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 MPNDQ8N594 471 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 FAM177BA6PVY3 158 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 CAMTA2O94983 1202 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 SLC5A1P13866 664 aa21.11■□□□□ 0.97
VIM-209ENST00000544301 MARCH10Q8NA82 808 aaPredicted RBP21.11■□□□□ 0.97
VIM-209ENST00000544301 LOC102724428A0A0B4J2F2 783 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 SIK1P57059 783 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 ANO6Q4KMQ2 910 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 TBC1D10CQ8IV04 446 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 SEC31BQ9NQW1 1179 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 NRAPQ86VF7 1730 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 APPP05067 770 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 TRDNQ13061 729 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 ITPK1Q13572 414 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 SPATA5Q8NB90 893 aa21.1■□□□□ 0.97
VIM-209ENST00000544301 RREB1Q92766 1687 aa21.09■□□□□ 0.97
VIM-209ENST00000544301 PARP10Q53GL7 1025 aa21.09■□□□□ 0.97
VIM-209ENST00000544301 CCAR1Q8IX12 1150 aaKnown RBP21.09■□□□□ 0.97
VIM-209ENST00000544301 ZNF830Q96NB3 372 aaPredicted RBP21.09■□□□□ 0.97
VIM-209ENST00000544301 STRBPQ96SI9 672 aaKnown RBP21.09■□□□□ 0.97
VIM-209ENST00000544301 MPHOSPH8Q99549 860 aa21.09■□□□□ 0.97
VIM-209ENST00000544301 DENND2AQ9ULE3 1009 aa21.09■□□□□ 0.97
VIM-209ENST00000544301 SNAP23O00161 211 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 KIAA2012Q0VF49 1180 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 SASS6Q6UVJ0 657 aa21.08■□□□□ 0.97
VIM-209ENST00000544301 LUZP1Q86V48 1076 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms