RNA–Protein interactions for RNA: ENST00000542700.6

CHMP4A-209, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 3

Gene CHMP4A, Length 847 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-209ENST00000542700 UHRF1Q96T88 793 aaPredicted RBP10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 DEFB129Q9H1M3 183 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 COL4A1P02462 1669 aa10.36□□□□□ -0.75
CHMP4A-209ENST00000542700 UNCXA6NJT0 531 aa10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 PRKCZQ05513 592 aa10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 SLAIN1Q8ND83 568 aa10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 FBXW7Q969H0 707 aa10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 P2RX7Q99572 595 aaKnown RBP10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 CPA4Q9UI42 421 aa10.35□□□□□ -0.75
CHMP4A-209ENST00000542700 INHAP05111 366 aa10.34□□□□□ -0.75
CHMP4A-209ENST00000542700 GTF2A2P52657 109 aa10.34□□□□□ -0.75
CHMP4A-209ENST00000542700 LRFN3Q9BTN0 628 aa10.34□□□□□ -0.75
CHMP4A-209ENST00000542700 TTYH1Q9H313 450 aaPredicted RBP10.34□□□□□ -0.75
CHMP4A-209ENST00000542700 OTOFQ9HC10 1997 aa10.34□□□□□ -0.75
CHMP4A-209ENST00000542700 ADGRA2Q96PE1 1338 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 USP2O75604 605 aaPredicted RBP10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 ELNP15502 786 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 MRE11P49959 708 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 ZNF428Q96B54 188 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 POLR3GLQ9BT43 218 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 CRISPLD2Q9H0B8 497 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 ANKIB1Q9P2G1 1089 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 GGA1Q9UJY5 639 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 SH3TC1Q8TE82 1336 aa10.33□□□□□ -0.76
CHMP4A-209ENST00000542700 MUC6Q6W4X9 2439 aa10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 BTBD19C9JJ37 291 aa10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 SUPT20HL1Q3ZLR7 823 aa10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 NBPF12Q5TAG4 269 aaPredicted RBP10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 HELBQ8NG08 1087 aaPredicted RBP10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 ASB2Q96Q27 587 aa10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 PAK6Q9NQU5 681 aaPredicted RBP10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 TRMT112Q9UI30 125 aaKnown RBP10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 GABRQQ9UN88 632 aa10.32□□□□□ -0.76
CHMP4A-209ENST00000542700 ADCY3O60266 1144 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 CAPN2P17655 700 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 DACT2Q5SW24 774 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 C17orf99Q6UX52 265 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 PODNQ7Z5L7 613 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 IL27Q8NEV9 243 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 ATXN2LQ8WWM7 1075 aaKnown RBP10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 NBPF3Q9H094 633 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 C11orf49Q9H6J7 331 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 PODXL2Q9NZ53 605 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 PPP2R3BQ9Y5P8 575 aa10.31□□□□□ -0.76
CHMP4A-209ENST00000542700 NLRP10Q86W26 655 aa10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 KIAA0825Q8IV33 1275 aa10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 ANKLE1Q8NAG6 615 aa10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 NECAB3Q96P71 396 aaPredicted RBP10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 MYO3BQ8WXR4 1341 aa10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 DDX60LQ5H9U9 1706 aaKnown RBP10.3□□□□□ -0.76
CHMP4A-209ENST00000542700 CDH23Q9H251 3354 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 CLRN2A0PK11 232 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 FCGRTP55899 365 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 VGLL4Q14135 290 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 MCM10Q7L590 875 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 PPM1EQ8WY54 764 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 ZBED3Q96IU2 234 aaPredicted RBP10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 XRN2Q9H0D6 950 aaKnown RBP eCLIP10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 ZCCHC17Q9NP64 241 aaKnown RBP10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 THEGQ9P2T0 379 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 NCOR1O75376 2440 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 ZNF804BA4D1E1 1349 aa10.29□□□□□ -0.76
CHMP4A-209ENST00000542700 DIAPH1O60610 1272 aaKnown RBP10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 CETPP11597 493 aa10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 RPS8P62241 208 aaKnown RBP10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 TMEM31Q5JXX7 168 aa10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 PPP1R3FQ6ZSY5 799 aaPredicted RBP10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 LBHD1Q9BQE6 289 aaPredicted RBP10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 TAOK2Q9UL54 1235 aa10.28□□□□□ -0.76
CHMP4A-209ENST00000542700 FLT3LGP49771 235 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 MRPS5P82675 430 aaKnown RBP10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 DLGAP5Q15398 846 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 THUMPD2Q9BTF0 503 aaKnown RBP10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 EPHX3Q9H6B9 360 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 VEZTQ9HBM0 779 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 MIS18AQ9NYP9 233 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 PFASO15067 1338 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 CLSPNQ9HAW4 1339 aa10.27□□□□□ -0.77
CHMP4A-209ENST00000542700 U2SURPO15042 1029 aaKnown RBP10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 SF3B3Q15393 1217 aaKnown RBP10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 STRIP1Q5VSL9 837 aa10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 RTF1Q92541 710 aaKnown RBP10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 PCDHAC2Q9Y5I4 1007 aa10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 CSADQ9Y600 493 aa10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 BDP1A6H8Y1 2624 aa10.26□□□□□ -0.77
CHMP4A-209ENST00000542700 SPDYE5A6NIY4 337 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 SMAD3P84022 425 aaKnown RBP10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 SNAPC2Q13487 334 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 DCTN1Q14203 1278 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 RASA3Q14644 834 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 SHHQ15465 462 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 PXYLP1Q8TE99 480 aa10.25□□□□□ -0.77
CHMP4A-209ENST00000542700 FAM86C2PA6NEL3 165 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 IRF6O14896 467 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 MYO1BO43795 1136 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 MMP14P50281 582 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 GRIN2CQ14957 1233 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 LRRC26Q2I0M4 334 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 HSP90AB3PQ58FF7 597 aa10.24□□□□□ -0.77
CHMP4A-209ENST00000542700 C9orf50Q5SZB4 431 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms