RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 IL1R1P14778 569 aa14.18□□□□□ -0.14
YBX3-213ENST00000542641 TDRD7Q8NHU6 1098 aaKnown RBP14.18□□□□□ -0.14
YBX3-213ENST00000542641 ECHDC1Q9NTX5 307 aa14.18□□□□□ -0.14
YBX3-213ENST00000542641 YDJCA8MPS7 323 aa14.17□□□□□ -0.14
YBX3-213ENST00000542641 SEMA3EO15041 775 aa14.17□□□□□ -0.14
YBX3-213ENST00000542641 MX1P20591 662 aa14.17□□□□□ -0.14
YBX3-213ENST00000542641 ARID4AP29374 1257 aaPredicted RBP14.17□□□□□ -0.14
YBX3-213ENST00000542641 FBXW7Q969H0 707 aa14.17□□□□□ -0.14
YBX3-213ENST00000542641 ZNF512BQ96KM6 892 aaPredicted RBP14.17□□□□□ -0.14
YBX3-213ENST00000542641 KCNQ5Q9NR82 932 aa14.17□□□□□ -0.14
YBX3-213ENST00000542641 FZD9O00144 591 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 RAD17O75943 681 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 ATP5JP18859 108 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 PDE4AP27815 886 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 EIF6P56537 245 aaKnown RBP14.16□□□□□ -0.14
YBX3-213ENST00000542641 GTF2IP78347 998 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 CHAF1AQ13111 956 aaPredicted RBP14.16□□□□□ -0.14
YBX3-213ENST00000542641 RASGRF1Q13972 1273 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 TSHZ3Q63HK5 1081 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 DENND2AQ9ULE3 1009 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 COL4A5P29400 1685 aa14.16□□□□□ -0.14
YBX3-213ENST00000542641 TTC41PQ6P2S7 1318 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 SALL3Q9BXA9 1300 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 USP17L3A6NCW0 530 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 USP17L4A6NCW7 530 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 ERC2O15083 957 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 MCAMP43121 646 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 PDE1AP54750 535 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 CXCL9Q07325 125 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 SCARF1Q14162 830 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 TTLL5Q6EMB2 1281 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 USP17L1Q7RTZ2 530 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 PLEKHM2Q8IWE5 1019 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 SPATA5Q8NB90 893 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 BOLA2Q9H3K6 86 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 SNRKQ9NRH2 765 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 HMG20BQ9P0W2 317 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 STAP2Q9UGK3 403 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 JAG2Q9Y219 1238 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 ARAP2Q8WZ64 1704 aa14.15□□□□□ -0.14
YBX3-213ENST00000542641 GLRX3O76003 335 aaKnown RBP14.14□□□□□ -0.15
YBX3-213ENST00000542641 TNIP1Q15025 636 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 STRIP1Q5VSL9 837 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 CIAPIN1Q6FI81 312 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 PI16Q6UXB8 463 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 WDR66Q8TBY9 1149 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.14□□□□□ -0.15
YBX3-213ENST00000542641 FAM205AQ6ZU69 1335 aa14.14□□□□□ -0.15
YBX3-213ENST00000542641 PSMD14O00487 310 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 ZAP70P43403 619 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 DACT2Q5SW24 774 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 PI4K2BQ8TCG2 481 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 OSBPL3Q9H4L5 887 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 GJA3Q9Y6H8 435 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 ZNF541Q9H0D2 1346 aa14.13□□□□□ -0.15
YBX3-213ENST00000542641 ZC3H4Q9UPT8 1303 aaKnown RBP14.13□□□□□ -0.15
YBX3-213ENST00000542641 SBF1O95248 1867 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 VIL1P09327 827 aaKnown RBP14.12□□□□□ -0.15
YBX3-213ENST00000542641 MFSD14BQ5SR56 506 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 DPY19L2Q6NUT2 758 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 SKAP1Q86WV1 359 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 TBC1D22AQ8WUA7 517 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 DNAJC2Q99543 621 aaKnown RBP14.12□□□□□ -0.15
YBX3-213ENST00000542641 HAUS7Q99871 368 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 NDUFB9Q9Y6M9 179 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 AOX1Q06278 1338 aa14.12□□□□□ -0.15
YBX3-213ENST00000542641 PDS5AQ29RF7 1337 aaKnown RBP14.12□□□□□ -0.15
YBX3-213ENST00000542641 CYP2E1P05181 493 aaPredicted RBP14.11□□□□□ -0.15
YBX3-213ENST00000542641 RGS3P49796 1198 aa14.11□□□□□ -0.15
YBX3-213ENST00000542641 CCDC88AQ3V6T2 1871 aa14.11□□□□□ -0.15
YBX3-213ENST00000542641 RSBN1LQ6PCB5 846 aaPredicted RBP14.11□□□□□ -0.15
YBX3-213ENST00000542641 GPC2Q8N158 579 aa14.11□□□□□ -0.15
YBX3-213ENST00000542641 SPDYE1Q8NFV5 336 aaPredicted RBP14.11□□□□□ -0.15
YBX3-213ENST00000542641 MXD3Q9BW11 206 aa14.11□□□□□ -0.15
YBX3-213ENST00000542641 ABCF2Q9UG63 623 aa14.11□□□□□ -0.15
YBX3-213ENST00000542641 COL1A1P02452 1464 aaPredicted RBP14.11□□□□□ -0.15
YBX3-213ENST00000542641 GOLIM4O00461 696 aa14.1□□□□□ -0.15
YBX3-213ENST00000542641 MAP4K4O95819 1239 aaPredicted RBP14.1□□□□□ -0.15
YBX3-213ENST00000542641 FKBP1AP62942 108 aaKnown RBP14.1□□□□□ -0.15
YBX3-213ENST00000542641 TBC1D9Q6ZT07 1266 aa14.1□□□□□ -0.15
YBX3-213ENST00000542641 ZGPATQ8N5A5 531 aaKnown RBP14.1□□□□□ -0.15
YBX3-213ENST00000542641 PAG1Q9NWQ8 432 aa14.1□□□□□ -0.15
YBX3-213ENST00000542641 MYO3BQ8WXR4 1341 aa14.1□□□□□ -0.15
YBX3-213ENST00000542641 DDNO94850 711 aaPredicted RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 RPS12P25398 132 aaKnown RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 TTF1Q15361 905 aaPredicted RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 SPTY2D1Q68D10 685 aaPredicted RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 CERS5Q8N5B7 392 aa14.09□□□□□ -0.15
YBX3-213ENST00000542641 AGBL3Q8NEM8 1001 aa14.09□□□□□ -0.15
YBX3-213ENST00000542641 EDC3Q96F86 508 aaKnown RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 ANTXR1Q9H6X2 564 aa14.09□□□□□ -0.15
YBX3-213ENST00000542641 LRP2BPQ9P2M1 347 aa14.09□□□□□ -0.15
YBX3-213ENST00000542641 DICER1Q9UPY3 1922 aaKnown RBP14.09□□□□□ -0.15
YBX3-213ENST00000542641 SALL1Q9NSC2 1324 aa14.09□□□□□ -0.15
YBX3-213ENST00000542641 CHD4Q14839 1912 aa14.08□□□□□ -0.16
YBX3-213ENST00000542641 GLTPD2A6NH11 291 aa14.08□□□□□ -0.16
YBX3-213ENST00000542641 TRIM6-TRIM34B2RNG4 842 aa14.08□□□□□ -0.16
YBX3-213ENST00000542641 F8W031 263 aaPredicted RBP14.08□□□□□ -0.16
YBX3-213ENST00000542641 LDHBP07195 334 aaKnown RBP14.08□□□□□ -0.16
YBX3-213ENST00000542641 GMPSP49915 693 aaPredicted RBP14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms