RNA–Protein interactions for RNA: ENST00000542541.6

HOMER3-205, Transcript of homer scaffold protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene HOMER3, Length 1,607 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOMER3-205ENST00000542541 HMG20BQ9P0W2 317 aa28.16■■■□□ 2.1
HOMER3-205ENST00000542541 PDS5AQ29RF7 1337 aaKnown RBP28.15■■■□□ 2.1
HOMER3-205ENST00000542541 RNF181Q9P0P0 153 aa28.14■■■□□ 2.1
HOMER3-205ENST00000542541 SCARF1Q14162 830 aa28.14■■■□□ 2.09
HOMER3-205ENST00000542541 WDR66Q8TBY9 1149 aa28.14■■■□□ 2.09
HOMER3-205ENST00000542541 HAUS7Q99871 368 aa28.14■■■□□ 2.09
HOMER3-205ENST00000542541 CHD4Q14839 1912 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 GTF2IP78347 998 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 C9orf131Q5VYM1 1079 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 TTLL5Q6EMB2 1281 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 SKAP1Q86WV1 359 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 SNRKQ9NRH2 765 aa28.13■■■□□ 2.09
HOMER3-205ENST00000542541 FAM205AQ6ZU69 1335 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 USP17L3A6NCW0 530 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 USP17L4A6NCW7 530 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 YDJCA8MPS7 323 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 EIF6P56537 245 aaKnown RBP28.12■■■□□ 2.09
HOMER3-205ENST00000542541 CHAF1AQ13111 956 aaPredicted RBP28.12■■■□□ 2.09
HOMER3-205ENST00000542541 STRIP1Q5VSL9 837 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 USP17L1Q7RTZ2 530 aa28.12■■■□□ 2.09
HOMER3-205ENST00000542541 FZD9O00144 591 aa28.11■■■□□ 2.09
HOMER3-205ENST00000542541 TBC1D22AQ8WUA7 517 aa28.11■■■□□ 2.09
HOMER3-205ENST00000542541 DNAJC2Q99543 621 aaKnown RBP28.11■■■□□ 2.09
HOMER3-205ENST00000542541 ZAP70P43403 619 aa28.1■■■□□ 2.09
HOMER3-205ENST00000542541 TTF1Q15361 905 aaPredicted RBP28.1■■■□□ 2.09
HOMER3-205ENST00000542541 FBXW7Q969H0 707 aa28.1■■■□□ 2.09
HOMER3-205ENST00000542541 TNIP1Q15025 636 aa28.1■■■□□ 2.09
HOMER3-205ENST00000542541 PI16Q6UXB8 463 aa28.1■■■□□ 2.09
HOMER3-205ENST00000542541 ZGPATQ8N5A5 531 aaKnown RBP28.1■■■□□ 2.09
HOMER3-205ENST00000542541 COL4A5P29400 1685 aa28.09■■■□□ 2.09
HOMER3-205ENST00000542541 DICER1Q9UPY3 1922 aaKnown RBP28.09■■■□□ 2.09
HOMER3-205ENST00000542541 TTC22Q5TAA0 569 aa28.09■■■□□ 2.09
HOMER3-205ENST00000542541 KCNQ5Q9NR82 932 aa28.09■■■□□ 2.09
HOMER3-205ENST00000542541 PAG1Q9NWQ8 432 aa28.09■■■□□ 2.09
HOMER3-205ENST00000542541 CXCL9Q07325 125 aa28.08■■■□□ 2.09
HOMER3-205ENST00000542541 CIAPIN1Q6FI81 312 aa28.08■■■□□ 2.09
HOMER3-205ENST00000542541 SALL1Q9NSC2 1324 aa28.08■■■□□ 2.09
HOMER3-205ENST00000542541 RAD17O75943 681 aa28.07■■■□□ 2.08
HOMER3-205ENST00000542541 CYP2E1P05181 493 aaPredicted RBP28.07■■■□□ 2.08
HOMER3-205ENST00000542541 FKBP1AP62942 108 aaKnown RBP28.07■■■□□ 2.08
HOMER3-205ENST00000542541 JAG2Q9Y219 1238 aa28.07■■■□□ 2.08
HOMER3-205ENST00000542541 GOLIM4O00461 696 aa28.07■■■□□ 2.08
HOMER3-205ENST00000542541 MFSD14BQ5SR56 506 aa28.07■■■□□ 2.08
HOMER3-205ENST00000542541 SPTY2D1Q68D10 685 aaPredicted RBP28.07■■■□□ 2.08
HOMER3-205ENST00000542541 NDUFB9Q9Y6M9 179 aa28.07■■■□□ 2.08
HOMER3-205ENST00000542541 ZC3H4Q9UPT8 1303 aaKnown RBP28.06■■■□□ 2.08
HOMER3-205ENST00000542541 COL1A1P02452 1464 aaPredicted RBP28.06■■■□□ 2.08
HOMER3-205ENST00000542541 TRIM6-TRIM34B2RNG4 842 aa28.06■■■□□ 2.08
HOMER3-205ENST00000542541 DACT2Q5SW24 774 aa28.06■■■□□ 2.08
HOMER3-205ENST00000542541 IGSF3O75054 1194 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 VIL1P09327 827 aaKnown RBP28.05■■■□□ 2.08
HOMER3-205ENST00000542541 CNTROBQ8N137 903 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 EVI5LQ96CN4 794 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 ABCF2Q9UG63 623 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 SUGT1Q9Y2Z0 365 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 MYO3BQ8WXR4 1341 aa28.05■■■□□ 2.08
HOMER3-205ENST00000542541 PSMD14O00487 310 aa28.04■■■□□ 2.08
HOMER3-205ENST00000542541 LRP2BPQ9P2M1 347 aa28.04■■■□□ 2.08
HOMER3-205ENST00000542541 TIAM2Q8IVF5 1701 aa28.04■■■□□ 2.08
HOMER3-205ENST00000542541 MAP4K4O95819 1239 aaPredicted RBP28.03■■■□□ 2.08
HOMER3-205ENST00000542541 TBC1D9Q6ZT07 1266 aa28.03■■■□□ 2.08
HOMER3-205ENST00000542541 ANTXR1Q9H6X2 564 aa28.03■■■□□ 2.08
HOMER3-205ENST00000542541 BMP2KLQ5H9B9 411 aa28.03■■■□□ 2.08
HOMER3-205ENST00000542541 RSBN1LQ6PCB5 846 aaPredicted RBP28.03■■■□□ 2.08
HOMER3-205ENST00000542541 DPY19L2Q6NUT2 758 aa28.02■■■□□ 2.08
HOMER3-205ENST00000542541 ERICH6Q7L0X2 663 aa28.02■■■□□ 2.08
HOMER3-205ENST00000542541 RILPL2Q969X0 211 aa28.02■■■□□ 2.08
HOMER3-205ENST00000542541 EDC3Q96F86 508 aaKnown RBP28.02■■■□□ 2.08
HOMER3-205ENST00000542541 LDHBP07195 334 aaKnown RBP28.01■■■□□ 2.07
HOMER3-205ENST00000542541 GSPT1P15170 499 aaKnown RBP28.01■■■□□ 2.07
HOMER3-205ENST00000542541 MAP3K12Q12852 859 aa28.01■■■□□ 2.07
HOMER3-205ENST00000542541 LRRFIP1Q32MZ4 808 aaKnown RBP28.01■■■□□ 2.07
HOMER3-205ENST00000542541 KBTBD3Q8NAB2 608 aa28.01■■■□□ 2.07
HOMER3-205ENST00000542541 AGBL3Q8NEM8 1001 aa28.01■■■□□ 2.07
HOMER3-205ENST00000542541 DDX24Q9GZR7 859 aaKnown RBP eCLIP28.01■■■□□ 2.07
HOMER3-205ENST00000542541 PIH1D3Q9NQM4 214 aaKnown RBP28.01■■■□□ 2.07
HOMER3-205ENST00000542541 AKAP11Q9UKA4 1901 aa28.01■■■□□ 2.07
HOMER3-205ENST00000542541 TICAM2Q86XR7 235 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 GPC2Q8N158 579 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 ZNF541Q9H0D2 1346 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 IDH1O75874 414 aaKnown RBP28■■■□□ 2.07
HOMER3-205ENST00000542541 RPS12P25398 132 aaKnown RBP28■■■□□ 2.07
HOMER3-205ENST00000542541 CERS5Q8N5B7 392 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 RAI14Q9P0K7 980 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 GJA3Q9Y6H8 435 aa28■■■□□ 2.07
HOMER3-205ENST00000542541 SCN9AQ15858 1988 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 MYH13Q9UKX3 1938 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 SDSP20132 328 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 ZSCAN25Q6NSZ9 544 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 TMED8Q6PL24 325 aaPredicted RBP27.99■■■□□ 2.07
HOMER3-205ENST00000542541 FSD1Q9BTV5 496 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 MXD3Q9BW11 206 aa27.99■■■□□ 2.07
HOMER3-205ENST00000542541 MAST3O60307 1309 aa27.98■■■□□ 2.07
HOMER3-205ENST00000542541 PRDX5P30044 214 aa27.98■■■□□ 2.07
HOMER3-205ENST00000542541 DZIP1Q86YF9 867 aaKnown RBP27.97■■■□□ 2.07
HOMER3-205ENST00000542541 MMP14P50281 582 aa27.96■■■□□ 2.07
HOMER3-205ENST00000542541 DPF2Q92785 391 aa27.96■■■□□ 2.07
HOMER3-205ENST00000542541 GMLQ99445 158 aa27.96■■■□□ 2.07
HOMER3-205ENST00000542541 KIAA0825Q8IV33 1275 aa27.96■■■□□ 2.07
HOMER3-205ENST00000542541 SLF2Q8IX21 1173 aa27.96■■■□□ 2.07
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms