RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 RBM47A0AV96 593 aaKnown RBP12.91□□□□□ -0.34
CDH3-203ENST00000542274 TPM1P09493 284 aa12.91□□□□□ -0.34
CDH3-203ENST00000542274 CERKQ8TCT0 537 aa12.91□□□□□ -0.34
CDH3-203ENST00000542274 FMNL2Q96PY5 1086 aa12.91□□□□□ -0.34
CDH3-203ENST00000542274 OSBPL3Q9H4L5 887 aa12.91□□□□□ -0.34
CDH3-203ENST00000542274 C9orf78Q9NZ63 289 aaPredicted RBP12.91□□□□□ -0.34
CDH3-203ENST00000542274 ITGB4P16144 1822 aa12.91□□□□□ -0.34
CDH3-203ENST00000542274 ZNF445P59923 1031 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 POLA2Q14181 598 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 NKX1-1Q15270 411 aaPredicted RBP12.9□□□□□ -0.34
CDH3-203ENST00000542274 KSR2Q6VAB6 950 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 TESPA1A2RU30 521 aaPredicted RBP12.9□□□□□ -0.34
CDH3-203ENST00000542274 EPB41L2O43491 1005 aaKnown RBP12.9□□□□□ -0.34
CDH3-203ENST00000542274 RHPN1Q8TCX5 695 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 SNX21Q969T3 373 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 KIF1BPQ96EK5 621 aa12.9□□□□□ -0.34
CDH3-203ENST00000542274 N4BP2Q86UW6 1770 aaPredicted RBP12.9□□□□□ -0.34
CDH3-203ENST00000542274 ERVV-2B6SEH9 535 aa12.9□□□□□ -0.35
CDH3-203ENST00000542274 SNRPA1P09661 255 aaKnown RBP12.9□□□□□ -0.35
CDH3-203ENST00000542274 KLHDC4Q8TBB5 520 aa12.9□□□□□ -0.35
CDH3-203ENST00000542274 XAGE3Q8WTP9 111 aa12.9□□□□□ -0.35
CDH3-203ENST00000542274 SYTL4Q96C24 671 aaPredicted RBP12.9□□□□□ -0.35
CDH3-203ENST00000542274 KAZALD1Q96I82 304 aa12.9□□□□□ -0.35
CDH3-203ENST00000542274 SPATA31A1Q5TZJ5 1347 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 SMAPO00193 183 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 AP1G2O75843 785 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 IGKV5-2P06315 115 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 ERCC3P19447 782 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 RWDD2BP57060 319 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 TTLL5Q6EMB2 1281 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 COPS6Q7L5N1 327 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 SUCLG2Q96I99 432 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 SH3GL3Q99963 347 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 SPTLC3Q9NUV7 552 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 TMOD3Q9NYL9 352 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 SUN2Q9UH99 717 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 EXOC5O00471 708 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 CCDC15Q0P6D6 951 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 NOL8Q76FK4 1167 aaKnown RBP12.89□□□□□ -0.35
CDH3-203ENST00000542274 MYLK4Q86YV6 388 aaPredicted RBP12.89□□□□□ -0.35
CDH3-203ENST00000542274 RPUSD2Q8IZ73 545 aaKnown RBP12.89□□□□□ -0.35
CDH3-203ENST00000542274 NGLY1Q96IV0 654 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 DDX21Q9NR30 783 aaKnown RBP eCLIP12.89□□□□□ -0.35
CDH3-203ENST00000542274 BLOC1S6Q9UL45 172 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 ASAP1Q9ULH1 1129 aa12.89□□□□□ -0.35
CDH3-203ENST00000542274 UBR2Q8IWV8 1755 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 K7ELQ4 463 aaPredicted RBP12.88□□□□□ -0.35
CDH3-203ENST00000542274 PHC3Q8NDX5 983 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 PIGBQ92521 554 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 LZTS2Q9BRK4 669 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 VEZTQ9HBM0 779 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 PALD1Q9ULE6 856 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 FRMD4BQ9Y2L6 1034 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 KCPQ6ZWJ8 1503 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 EIF3JO75822 258 aaKnown RBP12.88□□□□□ -0.35
CDH3-203ENST00000542274 DDIT3P35638 169 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 RPS6KA3P51812 740 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 RABEP1Q15276 862 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 RIC3Q7Z5B4 369 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 DZIP3Q86Y13 1208 aaKnown RBP12.88□□□□□ -0.35
CDH3-203ENST00000542274 ARL10Q8N8L6 244 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 CXorf38Q8TB03 319 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 SLX1AQ9BQ83 275 aa12.88□□□□□ -0.35
CDH3-203ENST00000542274 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.88□□□□□ -0.35
CDH3-203ENST00000542274 PAPPAQ13219 1627 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 ERC2O15083 957 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 FMNL3Q8IVF7 1028 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 BICC1Q9H694 974 aaKnown RBP12.87□□□□□ -0.35
CDH3-203ENST00000542274 HYPKQ9NX55 129 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 SLIT2O94813 1529 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 LAMB4A4D0S4 1761 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 JCADQ9P266 1359 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 C21orf2O43822 256 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 ZNF483Q8TF39 744 aaPredicted RBP12.87□□□□□ -0.35
CDH3-203ENST00000542274 MYD88Q99836 296 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 YIPF2Q9BWQ6 316 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 SIL1Q9H173 461 aa12.87□□□□□ -0.35
CDH3-203ENST00000542274 DOT1LQ8TEK3 1739 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 LRP6O75581 1613 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 SPATA31A5Q5VU36 1347 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 SPATA31A7Q8IWB4 1347 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 CHMLP26374 656 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 HSPA1LP34931 641 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 RBM6P78332 1123 aaKnown RBP12.86□□□□□ -0.35
CDH3-203ENST00000542274 RASA3Q14644 834 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 KLHL40Q2TBA0 621 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 EPHA10Q5JZY3 1008 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 PI4K2BQ8TCG2 481 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 PPM1EQ8WY54 764 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 ACSBG1Q96GR2 724 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 ESYT1Q9BSJ8 1104 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 NWD2Q9ULI1 1742 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 ATP5J2-PTCD1G3V325 749 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 A1BGP04217 495 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 NAA30Q147X3 362 aaPredicted RBP12.86□□□□□ -0.35
CDH3-203ENST00000542274 TEX35Q5T0J7 233 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 NCAPG2Q86XI2 1143 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 KCNB2Q92953 911 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 ANO2Q9NQ90 1003 aa12.86□□□□□ -0.35
CDH3-203ENST00000542274 NBPF26B4DH59 902 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms