RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 LIN7BQ9HAP6 207 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 NPHS2Q9NP85 383 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 OSGEPQ9NPF4 335 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 SH2B1Q9NRF2 756 aaPredicted RBP5.59□□□□□ -1.51
USP28-210ENST00000542033 LATS2Q9NRM7 1088 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 SOX13Q9UN79 622 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 A0A1W2PP55 124 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 GADD45BO75293 160 aaPredicted RBP5.58□□□□□ -1.52
USP28-210ENST00000542033 LDHBP07195 334 aaKnown RBP5.58□□□□□ -1.52
USP28-210ENST00000542033 CD68P34810 354 aaPredicted RBP5.58□□□□□ -1.52
USP28-210ENST00000542033 ALG1LQ6GMV1 187 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 TXNDC11Q6PKC3 985 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 CCNJLQ8IV13 435 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 HHIPQ96QV1 700 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 EHD4Q9H223 541 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 TRAK1Q9UPV9 953 aa5.58□□□□□ -1.52
USP28-210ENST00000542033 CCDC9Q9Y3X0 531 aaKnown RBP5.58□□□□□ -1.52
USP28-210ENST00000542033 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.57□□□□□ -1.52
USP28-210ENST00000542033 IKBKEQ14164 716 aa5.57□□□□□ -1.52
USP28-210ENST00000542033 NPAS4Q8IUM7 802 aa5.57□□□□□ -1.52
USP28-210ENST00000542033 FBF1Q8TES7 1133 aa5.57□□□□□ -1.52
USP28-210ENST00000542033 PPP4R2Q9NY27 417 aa5.57□□□□□ -1.52
USP28-210ENST00000542033 A0A096LPE4 126 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 A0A1W2PPZ6 126 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 C19orf57Q0VDD7 668 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 LARP7Q4G0J3 582 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP28-210ENST00000542033 ADAMTSL4Q6UY14 1074 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 TMEM130Q8N3G9 435 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 GALNT11Q8NCW6 608 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 DDX54Q8TDD1 881 aaKnown RBP5.56□□□□□ -1.52
USP28-210ENST00000542033 EPS8L3Q8TE67 593 aaKnown RBP5.56□□□□□ -1.52
USP28-210ENST00000542033 WFDC12Q8WWY7 111 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 SLC7A3Q8WY07 619 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 CARD10Q9BWT7 1032 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 SOX17Q9H6I2 414 aaPredicted RBP5.56□□□□□ -1.52
USP28-210ENST00000542033 AKTIPQ9H8T0 292 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 WWC3Q9ULE0 1092 aa5.56□□□□□ -1.52
USP28-210ENST00000542033 ADAM23O75077 832 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 PRPF40AO75400 957 aaKnown RBP5.55□□□□□ -1.52
USP28-210ENST00000542033 IREB2P48200 963 aaKnown RBP5.55□□□□□ -1.52
USP28-210ENST00000542033 PTPN12Q05209 780 aaKnown RBP5.55□□□□□ -1.52
USP28-210ENST00000542033 DUOXA2Q1HG44 320 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 VN1R5Q7Z5H4 357 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 TCF12Q99081 682 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 BCL2L13Q9BXK5 485 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 BCL11AQ9H165 835 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 CLEC4MQ9H2X3 399 aaPredicted RBP5.55□□□□□ -1.52
USP28-210ENST00000542033 ZFYVE1Q9HBF4 777 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 SPG7Q9UQ90 795 aa5.55□□□□□ -1.52
USP28-210ENST00000542033 METTL12A8MUP2 240 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 F8W735 103 aaPredicted RBP5.54□□□□□ -1.52
USP28-210ENST00000542033 NOS3P29474 1203 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 DOC2BQ14184 412 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 FOXD4L6Q3SYB3 417 aaPredicted RBP5.54□□□□□ -1.52
USP28-210ENST00000542033 PRPF40BQ6NWY9 871 aaKnown RBP5.54□□□□□ -1.52
USP28-210ENST00000542033 PI16Q6UXB8 463 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 FOXD4L3Q6VB84 417 aaPredicted RBP5.54□□□□□ -1.52
USP28-210ENST00000542033 ACAD11Q709F0 780 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.54□□□□□ -1.52
USP28-210ENST00000542033 KLHDC7BQ96G42 594 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 SETDB2Q96T68 719 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 KRTAP9-2Q9BYQ4 174 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 CEP41Q9BYV8 373 aa5.54□□□□□ -1.52
USP28-210ENST00000542033 SOX1O00570 391 aaPredicted RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 GIPC1O14908 333 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 ESRRAP11474 423 aaPredicted RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 ITPKAP23677 461 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 RANGAP1P46060 587 aaPredicted RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 GRIA4P48058 902 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 NLRP12P59046 1061 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 XPCQ01831 940 aaPredicted RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 PCDH1Q08174 1060 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 GRM2Q14416 872 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 ZNF326Q5BKZ1 582 aaKnown RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 HP1BP3Q5SSJ5 553 aaPredicted RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 FRMD6Q96NE9 622 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 DUSP9Q99956 384 aaKnown RBP5.53□□□□□ -1.52
USP28-210ENST00000542033 TPSG1Q9NRR2 321 aa5.53□□□□□ -1.52
USP28-210ENST00000542033 KRTAP9-6A0A140TA67 174 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 TMEM238LA0A1B0GVL6 79 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 K7ELQ4 463 aaPredicted RBP5.52□□□□□ -1.53
USP28-210ENST00000542033 FURINP09958 794 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 XRCC5P13010 732 aaKnown RBP5.52□□□□□ -1.53
USP28-210ENST00000542033 GLB1P16278 677 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 GNA15P30679 374 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 HNRNPUQ00839 825 aaKnown RBP eCLIP5.52□□□□□ -1.53
USP28-210ENST00000542033 SPRED3Q2MJR0 410 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 RPS26P11Q5JNZ5 115 aaPredicted RBP5.52□□□□□ -1.53
USP28-210ENST00000542033 FBXO33Q7Z6M2 555 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 GIPC2Q8TF65 315 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 FOXD4L4Q8WXT5 416 aaPredicted RBP5.52□□□□□ -1.53
USP28-210ENST00000542033 TP53INP1Q96A56 240 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 BCO2Q9BYV7 579 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 SRCIN1Q9C0H9 1055 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 RNF208Q9H0X6 261 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 ZNF576Q9H609 170 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 ABCB6Q9NP58 842 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 KCNK4Q9NYG8 393 aa5.52□□□□□ -1.53
USP28-210ENST00000542033 TM4SF5O14894 197 aa5.51□□□□□ -1.53
USP28-210ENST00000542033 DDX3YO15523 660 aaKnown RBP5.51□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms