RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 MVPQ14764 893 aaKnown RBP12.12□□□□□ -0.47
YBX3-212ENST00000542002 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
YBX3-212ENST00000542002 GRIK5Q16478 980 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 SSH3Q8TE77 659 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 CEP126Q9P2H0 1117 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 FBXO3Q9UK99 471 aa12.12□□□□□ -0.47
YBX3-212ENST00000542002 ADORA1P30542 326 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 SCARF1Q14162 830 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 CST9Q5W186 159 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 KIAA0825Q8IV33 1275 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 LPIN2Q92539 896 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 GLIS2Q9BZE0 524 aaPredicted RBP12.11□□□□□ -0.47
YBX3-212ENST00000542002 MYOZ2Q9NPC6 264 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 ZBTB40Q9NUA8 1239 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 SCAF8Q9UPN6 1271 aaKnown RBP12.11□□□□□ -0.47
YBX3-212ENST00000542002 PCDHAC2Q9Y5I4 1007 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 ZNF609O15014 1411 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 FAM205AQ6ZU69 1335 aa12.11□□□□□ -0.47
YBX3-212ENST00000542002 KIF4BQ2VIQ3 1234 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 NBPF9Q3BBW0 867 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 CEP85Q6P2H3 762 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 USP48Q86UV5 1035 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 SIRT2Q8IXJ6 389 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 ZC3H15Q8WU90 426 aaKnown RBP12.1□□□□□ -0.47
YBX3-212ENST00000542002 A0A1B0GUL6 1792 aa12.1□□□□□ -0.47
YBX3-212ENST00000542002 F8W031 263 aaPredicted RBP12.09□□□□□ -0.47
YBX3-212ENST00000542002 CAPN15O75808 1086 aa12.09□□□□□ -0.47
YBX3-212ENST00000542002 IFIT1P09914 478 aaKnown RBP12.09□□□□□ -0.47
YBX3-212ENST00000542002 MS4A1P11836 297 aa12.09□□□□□ -0.47
YBX3-212ENST00000542002 PDE3AQ14432 1141 aa12.09□□□□□ -0.47
YBX3-212ENST00000542002 ATP2B3Q16720 1220 aa12.09□□□□□ -0.47
YBX3-212ENST00000542002 ZBED3Q96IU2 234 aaPredicted RBP12.09□□□□□ -0.47
YBX3-212ENST00000542002 AOX1Q06278 1338 aa12.09□□□□□ -0.47
YBX3-212ENST00000542002 ADM5C9JUS6 153 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 WNT10BO00744 389 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 SLC5A1P13866 664 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 PHKA1P46020 1223 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 FKBP1AP62942 108 aaKnown RBP12.08□□□□□ -0.48
YBX3-212ENST00000542002 CAVIN4Q5BKX8 364 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 VPS37DQ86XT2 251 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 NOP58Q9Y2X3 529 aaKnown RBP12.08□□□□□ -0.48
YBX3-212ENST00000542002 ZNF646O15015 1829 aaPredicted RBP12.08□□□□□ -0.48
YBX3-212ENST00000542002 MYO3BQ8WXR4 1341 aa12.08□□□□□ -0.48
YBX3-212ENST00000542002 SURF6O75683 361 aaKnown RBP12.07□□□□□ -0.48
YBX3-212ENST00000542002 CHAF1AQ13111 956 aaPredicted RBP12.07□□□□□ -0.48
YBX3-212ENST00000542002 G3BP1Q13283 466 aaKnown RBP eCLIP12.07□□□□□ -0.48
YBX3-212ENST00000542002 MFSD14BQ5SR56 506 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 ANGEL2Q5VTE6 544 aaKnown RBP12.07□□□□□ -0.48
YBX3-212ENST00000542002 CDC37L1Q7L3B6 337 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 OGFOD1Q8N543 542 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 CREBZFQ9NS37 354 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 GGA3Q9NZ52 723 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 DDX19BQ9UMR2 479 aa12.07□□□□□ -0.48
YBX3-212ENST00000542002 A0A1B0GUL7 405 aa12.06□□□□□ -0.48
YBX3-212ENST00000542002 TMEM88BA6NKF7 163 aa12.06□□□□□ -0.48
YBX3-212ENST00000542002 CCDC102BQ68D86 513 aa12.06□□□□□ -0.48
YBX3-212ENST00000542002 KRT26Q7Z3Y9 468 aa12.06□□□□□ -0.48
YBX3-212ENST00000542002 XAGE2Q96GT9 111 aa12.06□□□□□ -0.48
YBX3-212ENST00000542002 PRMT6Q96LA8 375 aaPredicted RBP12.06□□□□□ -0.48
YBX3-212ENST00000542002 CFAP100Q494V2 611 aa12.05□□□□□ -0.48
YBX3-212ENST00000542002 PRAMEF18Q5VWM3 479 aa12.05□□□□□ -0.48
YBX3-212ENST00000542002 MTMR14Q8NCE2 650 aa12.05□□□□□ -0.48
YBX3-212ENST00000542002 DCPSQ96C86 337 aaKnown RBP12.05□□□□□ -0.48
YBX3-212ENST00000542002 NEUROD6Q96NK8 337 aa12.05□□□□□ -0.48
YBX3-212ENST00000542002 COL1A1P02452 1464 aaPredicted RBP12.05□□□□□ -0.48
YBX3-212ENST00000542002 PSME4Q14997 1843 aa12.04□□□□□ -0.48
YBX3-212ENST00000542002 FRAT2O75474 233 aaPredicted RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 CELF2O95319 508 aaKnown RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 RRP1P56182 461 aaKnown RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 KLRG1Q96E93 195 aa12.04□□□□□ -0.48
YBX3-212ENST00000542002 MKRN1Q9UHC7 482 aaKnown RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 TTF2Q9UNY4 1162 aaKnown RBP12.04□□□□□ -0.48
YBX3-212ENST00000542002 EXOC6BQ9Y2D4 811 aa12.04□□□□□ -0.48
YBX3-212ENST00000542002 AKAP2Q9Y2D5 859 aa12.04□□□□□ -0.48
YBX3-212ENST00000542002 PCNTO95613 3336 aa12.04□□□□□ -0.48
YBX3-212ENST00000542002 SPDYE2BA6NHP3 402 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 SPDYE6P0CI01 402 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 MMP14P50281 582 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 RASGRF1Q13972 1273 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 DLGAP5Q15398 846 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 TNNI3KQ59H18 835 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 RPAP2Q8IXW5 612 aaPredicted RBP12.03□□□□□ -0.48
YBX3-212ENST00000542002 EAF2Q96CJ1 260 aaPredicted RBP12.03□□□□□ -0.48
YBX3-212ENST00000542002 ZNF408Q9H9D4 720 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 HDAC9Q9UKV0 1011 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 FPGT-TNNI3KV9GXZ4 949 aa12.03□□□□□ -0.48
YBX3-212ENST00000542002 ZBTB22O15209 634 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 CRKP46108 304 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 OS9Q13438 667 aaPredicted RBP12.02□□□□□ -0.49
YBX3-212ENST00000542002 PI16Q6UXB8 463 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 SULF1Q8IWU6 871 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 TBC1D22AQ8WUA7 517 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 CDCA5Q96FF9 252 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 DBNDD2Q9BQY9 259 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 GPR108Q9NPR9 543 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 TLR7Q9NYK1 1049 aaKnown RBP12.02□□□□□ -0.49
YBX3-212ENST00000542002 SERPINA10Q9UK55 444 aa12.02□□□□□ -0.49
YBX3-212ENST00000542002 CLRN2A0PK11 232 aa12.01□□□□□ -0.49
YBX3-212ENST00000542002 PRDX5P30044 214 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms