RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 PDE6AP16499 860 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 ZNF512BQ96KM6 892 aaPredicted RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 BRPF3Q9ULD4 1205 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 ONECUT3O60422 494 aaPredicted RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 LY75O60449 1722 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 APPP05067 770 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 ANKRD1Q15327 319 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 SKOR2Q2VWA4 1001 aaPredicted RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 CAVIN1Q6NZI2 390 aaKnown RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 MAGEB6Q8N7X4 407 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 GPT2Q8TD30 523 aa17.25■□□□□ 0.35
CLIP1-216ENST00000541410 GPHNQ9NQX3 736 aaPredicted RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 RBM27Q9P2N5 1060 aaKnown RBP17.25■□□□□ 0.35
CLIP1-216ENST00000541410 ARAP2Q8WZ64 1704 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 TRIM37O94972 964 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 APOBRQ0VD83 1088 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 TTF1Q15361 905 aaPredicted RBP17.24■□□□□ 0.35
CLIP1-216ENST00000541410 IL27Q8NEV9 243 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 DENND2AQ9ULE3 1009 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 JAK2O60674 1132 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 ZSCAN22P10073 491 aaPredicted RBP17.24■□□□□ 0.35
CLIP1-216ENST00000541410 SF3B3Q15393 1217 aaKnown RBP17.24■□□□□ 0.35
CLIP1-216ENST00000541410 TRAPPC3LQ5T215 181 aa17.24■□□□□ 0.35
CLIP1-216ENST00000541410 DHX32Q7L7V1 743 aaKnown RBP17.24■□□□□ 0.35
CLIP1-216ENST00000541410 RTL9Q8NET4 1388 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 C4BP0C0L5 1744 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 GOLGA6L3A6NEY3 463 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 KLHL40Q2TBA0 621 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 GAS2L3Q86XJ1 694 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 MINPP1Q9UNW1 487 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 KLRK1P26718 216 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 FERMT3Q86UX7 667 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 NLRP3Q96P20 1036 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 CNPY2Q9Y2B0 182 aa17.23■□□□□ 0.35
CLIP1-216ENST00000541410 PTMSP20962 102 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 LARP1BQ659C4 914 aaKnown RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 TPTE2Q6XPS3 522 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 DDX11Q96FC9 970 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 BCL11BQ9C0K0 894 aaPredicted RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 C4AP0C0L4 1744 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 BRWD3Q6RI45 1802 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 TCRBV5S4A2TA0A5A2 114 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 CCT2P78371 535 aaKnown RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 IMMTQ16891 758 aaKnown RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 ZSCAN25Q6NSZ9 544 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 NKX2-3Q8TAU0 364 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 ALDH8A1Q9H2A2 487 aaPredicted RBP17.22■□□□□ 0.35
CLIP1-216ENST00000541410 ABCF2Q9UG63 623 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 MTMR6Q9Y217 621 aa17.22■□□□□ 0.35
CLIP1-216ENST00000541410 GADD45BO75293 160 aaPredicted RBP17.21■□□□□ 0.35
CLIP1-216ENST00000541410 F13A1P00488 732 aa17.21■□□□□ 0.35
CLIP1-216ENST00000541410 FOSBP53539 338 aa17.21■□□□□ 0.35
CLIP1-216ENST00000541410 EXOSC10Q01780 885 aaKnown RBP17.21■□□□□ 0.35
CLIP1-216ENST00000541410 AIDAQ96BJ3 306 aa17.21■□□□□ 0.35
CLIP1-216ENST00000541410 NYXQ9GZU5 481 aa17.21■□□□□ 0.35
CLIP1-216ENST00000541410 NCOA5Q9HCD5 579 aaKnown RBP17.21■□□□□ 0.35
CLIP1-216ENST00000541410 BSDC1Q9NW68 430 aaPredicted RBP17.21■□□□□ 0.35
CLIP1-216ENST00000541410 SCRN1Q12765 414 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 NFIXQ14938 502 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 UBE3CQ15386 1083 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 SLC10A5Q5PT55 438 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 CDC37L1Q7L3B6 337 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 TICAM2Q86XR7 235 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 RAB11FIP4Q86YS3 637 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 MIGA1Q8NAN2 632 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 GTF3C6Q969F1 213 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 ARMT1Q9H993 441 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 INCENPQ9NQS7 918 aa17.21■□□□□ 0.34
CLIP1-216ENST00000541410 ZNF213O14771 459 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 RPS8P62241 208 aaKnown RBP17.2■□□□□ 0.34
CLIP1-216ENST00000541410 FAM173BQ6P4H8 233 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 STK11IPQ8N1F8 1099 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 PANK2Q9BZ23 570 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 LRP2BPQ9P2M1 347 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 CTNNA3Q9UI47 895 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 FSD2A1L4K1 749 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 MBD4O95243 580 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 HMGB1P09429 215 aaKnown RBP17.2■□□□□ 0.34
CLIP1-216ENST00000541410 MAP3K12Q12852 859 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 USP48Q86UV5 1035 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 NBPF3Q9H094 633 aa17.2■□□□□ 0.34
CLIP1-216ENST00000541410 A0A1B0GUL6 1792 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 FIBPO43427 364 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 PRKAB2O43741 272 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 XRCC6P12956 609 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLIP1-216ENST00000541410 KRT27Q7Z3Y8 459 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 VPS37DQ86XT2 251 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 TFCP2L1Q9NZI6 479 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 JAG2Q9Y219 1238 aa17.19■□□□□ 0.34
CLIP1-216ENST00000541410 DNM1Q05193 864 aaKnown RBP17.18■□□□□ 0.34
CLIP1-216ENST00000541410 STRBPQ96SI9 672 aaKnown RBP17.18■□□□□ 0.34
CLIP1-216ENST00000541410 TBC1D10CQ8IV04 446 aa17.18■□□□□ 0.34
CLIP1-216ENST00000541410 TNRC6CQ9HCJ0 1690 aaKnown RBP17.18■□□□□ 0.34
CLIP1-216ENST00000541410 DOCK2Q92608 1830 aa17.17■□□□□ 0.34
CLIP1-216ENST00000541410 ADGRA1Q86SQ6 560 aa17.17■□□□□ 0.34
CLIP1-216ENST00000541410 COL24A1Q17RW2 1714 aa17.17■□□□□ 0.34
CLIP1-216ENST00000541410 GOLGB1Q14789 3259 aaKnown RBP17.17■□□□□ 0.34
CLIP1-216ENST00000541410 LCORLQ8N3X6 602 aa17.17■□□□□ 0.34
CLIP1-216ENST00000541410 FAM84BQ96KN1 310 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms