RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 ZKSCAN1P17029 563 aaPredicted RBP20.3■□□□□ 0.84
SPIDR-227ENST00000541342 ERFEQ4G0M1 354 aa20.3■□□□□ 0.84
SPIDR-227ENST00000541342 ZMYM1Q5SVZ6 1142 aa20.3■□□□□ 0.84
SPIDR-227ENST00000541342 TPCN1Q9ULQ1 816 aa20.3■□□□□ 0.84
SPIDR-227ENST00000541342 NOLC1Q14978 699 aaKnown RBP eCLIP20.29■□□□□ 0.84
SPIDR-227ENST00000541342 CCDC152Q4G0S7 254 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 CYP46A1Q9Y6A2 500 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 RTL9Q8NET4 1388 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 MROH5Q6ZUA9 1318 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 TAF1P21675 1872 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 ZAP70P43403 619 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 C3orf67Q6ZVT6 689 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 MYH7P12883 1935 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 FGFR2P21802 821 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 MCAMP43121 646 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 BICDL1Q6ZP65 573 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 TICAM2Q86XR7 235 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 QTRT2Q9H974 415 aaKnown RBP20.29■□□□□ 0.84
SPIDR-227ENST00000541342 SH2B1Q9NRF2 756 aaPredicted RBP20.29■□□□□ 0.84
SPIDR-227ENST00000541342 HELLSQ9NRZ9 838 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 NARFQ9UHQ1 456 aa20.29■□□□□ 0.84
SPIDR-227ENST00000541342 C4BP0C0L5 1744 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 MYO5AQ9Y4I1 1855 aaKnown RBP20.28■□□□□ 0.84
SPIDR-227ENST00000541342 MAP7D2Q96T17 732 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 COL24A1Q17RW2 1714 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 RNF113AO15541 343 aaKnown RBP20.28■□□□□ 0.84
SPIDR-227ENST00000541342 MYRIPQ8NFW9 859 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 SPTLC3Q9NUV7 552 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 C4AP0C0L4 1744 aa20.28■□□□□ 0.84
SPIDR-227ENST00000541342 BRWD3Q6RI45 1802 aa20.27■□□□□ 0.84
SPIDR-227ENST00000541342 ZSCAN31Q96LW9 406 aaPredicted RBP20.27■□□□□ 0.84
SPIDR-227ENST00000541342 SNAP23O00161 211 aa20.27■□□□□ 0.84
SPIDR-227ENST00000541342 PUM3Q15397 648 aaKnown RBP20.27■□□□□ 0.83
SPIDR-227ENST00000541342 MAST3O60307 1309 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 RGL2O15211 777 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 RNF20Q5VTR2 975 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 MPHOSPH8Q99549 860 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 KCNF1Q9H3M0 494 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 VPS37CA5D8V6 355 aaPredicted RBP20.26■□□□□ 0.83
SPIDR-227ENST00000541342 TSGA10IPQ3SY00 556 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 CDC37L1Q7L3B6 337 aa20.26■□□□□ 0.83
SPIDR-227ENST00000541342 ZNF512BQ96KM6 892 aaPredicted RBP20.26■□□□□ 0.83
SPIDR-227ENST00000541342 M0R2C6 588 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 HSP90B1P14625 803 aaKnown RBP20.25■□□□□ 0.83
SPIDR-227ENST00000541342 PHKA1P46020 1223 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 TTC6Q86TZ1 520 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 LPIN2Q92539 896 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 HMG20BQ9P0W2 317 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 A0A1B0GUL6 1792 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 CCDC102BQ68D86 513 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 TSC1Q92574 1164 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 OSBP2Q969R2 916 aa20.25■□□□□ 0.83
SPIDR-227ENST00000541342 RTCBQ9Y3I0 505 aaKnown RBP20.25■□□□□ 0.83
SPIDR-227ENST00000541342 ARHGEF1Q92888 912 aaKnown RBP20.25■□□□□ 0.83
SPIDR-227ENST00000541342 FAM173BQ6P4H8 233 aa20.24■□□□□ 0.83
SPIDR-227ENST00000541342 LRRC4BQ9NT99 713 aa20.24■□□□□ 0.83
SPIDR-227ENST00000541342 U3KPZ7 1027 aaPredicted RBP20.24■□□□□ 0.83
SPIDR-227ENST00000541342 KLHL34Q8N239 644 aa20.24■□□□□ 0.83
SPIDR-227ENST00000541342 PKNOX2Q96KN3 472 aa20.24■□□□□ 0.83
SPIDR-227ENST00000541342 BCL11BQ9C0K0 894 aaPredicted RBP20.24■□□□□ 0.83
SPIDR-227ENST00000541342 CYP21A2P08686 494 aa20.24■□□□□ 0.83
SPIDR-227ENST00000541342 ARID4AP29374 1257 aaPredicted RBP20.23■□□□□ 0.83
SPIDR-227ENST00000541342 IGHMBP2P38935 993 aaKnown RBP20.23■□□□□ 0.83
SPIDR-227ENST00000541342 TCEANC2Q96MN5 208 aa20.23■□□□□ 0.83
SPIDR-227ENST00000541342 LAMA4Q16363 1823 aa20.23■□□□□ 0.83
SPIDR-227ENST00000541342 ZPR1O75312 459 aa20.23■□□□□ 0.83
SPIDR-227ENST00000541342 PSMA5P28066 241 aa20.23■□□□□ 0.83
SPIDR-227ENST00000541342 ZNF710Q8N1W2 664 aa20.23■□□□□ 0.83
SPIDR-227ENST00000541342 SF3B3Q15393 1217 aaKnown RBP20.22■□□□□ 0.83
SPIDR-227ENST00000541342 DNTTIP2Q5QJE6 756 aaKnown RBP20.22■□□□□ 0.83
SPIDR-227ENST00000541342 FERMT3Q86UX7 667 aa20.22■□□□□ 0.83
SPIDR-227ENST00000541342 HSPD1P10809 573 aaKnown RBP20.22■□□□□ 0.83
SPIDR-227ENST00000541342 LIG1P18858 919 aa20.22■□□□□ 0.83
SPIDR-227ENST00000541342 GTF2F1P35269 517 aaKnown RBP eCLIP20.22■□□□□ 0.832e-13■■■■□ 26.1
SPIDR-227ENST00000541342 DSCC1Q9BVC3 393 aa20.22■□□□□ 0.83
SPIDR-227ENST00000541342 PRIMPOLQ96LW4 560 aa20.22■□□□□ 0.83
SPIDR-227ENST00000541342 PYCARDQ9ULZ3 195 aa20.22■□□□□ 0.83
SPIDR-227ENST00000541342 RPS6KB1P23443 525 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 SLC10A5Q5PT55 438 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 LARP1BQ659C4 914 aaKnown RBP20.21■□□□□ 0.83
SPIDR-227ENST00000541342 A0A0G2JLW4 131 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 SLC5A1P13866 664 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 PLCB2Q00722 1185 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 CHRNDQ07001 517 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 BLOC1S2Q6QNY1 142 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 SETDB2Q96T68 719 aa20.21■□□□□ 0.83
SPIDR-227ENST00000541342 PIH1D3Q9NQM4 214 aaKnown RBP20.21■□□□□ 0.83
SPIDR-227ENST00000541342 TOB2Q14106 344 aaPredicted RBP20.2■□□□□ 0.82
SPIDR-227ENST00000541342 KIAA1524Q8TCG1 905 aa20.2■□□□□ 0.82
SPIDR-227ENST00000541342 FOXP2O15409 715 aa20.2■□□□□ 0.82
SPIDR-227ENST00000541342 HMGN5P82970 282 aaKnown RBP20.2■□□□□ 0.82
SPIDR-227ENST00000541342 FAM196AQ6ZSG2 479 aa20.2■□□□□ 0.82
SPIDR-227ENST00000541342 ARID3AQ99856 593 aa20.2■□□□□ 0.82
SPIDR-227ENST00000541342 PUS7LQ9H0K6 701 aaKnown RBP20.2■□□□□ 0.82
SPIDR-227ENST00000541342 ELP1O95163 1332 aa20.2■□□□□ 0.82
SPIDR-227ENST00000541342 ZFYP08048 801 aaPredicted RBP20.2■□□□□ 0.82
SPIDR-227ENST00000541342 STOX1Q6ZVD7 989 aa20.19■□□□□ 0.82
SPIDR-227ENST00000541342 MTERF4Q7Z6M4 381 aaKnown RBP20.19■□□□□ 0.82
SPIDR-227ENST00000541342 CDC5LQ99459 802 aaKnown RBP20.19■□□□□ 0.82
SPIDR-227ENST00000541342 MRVI1Q9Y6F6 885 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms