RNA–Protein interactions for RNA: ENST00000541284.5

CNOT4-212, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene CNOT4, Length 3,563 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-212ENST00000541284 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.24□□□□□ -0.61
CNOT4-212ENST00000541284 TNS1Q9HBL0 1735 aaKnown RBP11.24□□□□□ -0.61
CNOT4-212ENST00000541284 CACNA1SQ13698 1873 aa11.24□□□□□ -0.61
CNOT4-212ENST00000541284 PDIA3P30101 505 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 CDC25BP30305 580 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 MTERF4Q7Z6M4 381 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 NCOA5Q9HCD5 579 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 CACTINQ8WUQ7 758 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 ZNF594Q96JF6 807 aaPredicted RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 PUS3Q9BZE2 481 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 GPHNQ9NQX3 736 aaPredicted RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 EP400Q96L91 3159 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 A0A087WWV3 80 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 ZNF165P49910 485 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 TTLL5Q6EMB2 1281 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 DHX40Q8IX18 779 aaKnown RBP11.23□□□□□ -0.61
CNOT4-212ENST00000541284 NKX2-3Q8TAU0 364 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 PRDM4Q9UKN5 801 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 TAF1P21675 1872 aa11.23□□□□□ -0.61
CNOT4-212ENST00000541284 CARMIL3Q8ND23 1372 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 TTC5Q8N0Z6 440 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 OSBP2Q969R2 916 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 CCDC94Q9BW85 323 aaPredicted RBP11.22□□□□□ -0.61
CNOT4-212ENST00000541284 PLA2G12BQ9BX93 195 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 CIAO1O76071 339 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 HMGB1P09429 215 aaKnown RBP11.22□□□□□ -0.61
CNOT4-212ENST00000541284 IL2RBP14784 551 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 TRIM28Q13263 835 aaKnown RBP11.22□□□□□ -0.61
CNOT4-212ENST00000541284 DNTTIP2Q5QJE6 756 aaKnown RBP11.22□□□□□ -0.61
CNOT4-212ENST00000541284 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.22□□□□□ -0.61
CNOT4-212ENST00000541284 ISCA1Q9BUE6 129 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 HPS5Q9UPZ3 1129 aa11.22□□□□□ -0.61
CNOT4-212ENST00000541284 ATRNO75882 1429 aa11.21□□□□□ -0.61
CNOT4-212ENST00000541284 EYA2O00167 538 aa11.21□□□□□ -0.61
CNOT4-212ENST00000541284 ARID5BQ14865 1188 aa11.21□□□□□ -0.61
CNOT4-212ENST00000541284 BICD2Q8TD16 824 aa11.21□□□□□ -0.61
CNOT4-212ENST00000541284 ZNF274Q96GC6 653 aaPredicted RBP11.21□□□□□ -0.61
CNOT4-212ENST00000541284 IL15P40933 162 aaPredicted RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CCT2P78371 535 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 KIF3AQ9Y496 699 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 SPATA31A1Q5TZJ5 1347 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 A0A1B0GUL7 405 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 RNF113AO15541 343 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 A1BGP04217 495 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 HSP90B1P14625 803 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CABP4P57796 275 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 SCARF1Q14162 830 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CHST3Q7LGC8 479 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CCAR1Q8IX12 1150 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 FMR1NBQ8N0W7 255 aaPredicted RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 ZCRB1Q8TBF4 217 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CWC25Q9NXE8 425 aaPredicted RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CFAP45Q9UL16 551 aa11.21□□□□□ -0.62
CNOT4-212ENST00000541284 CCDC9Q9Y3X0 531 aaKnown RBP11.21□□□□□ -0.62
CNOT4-212ENST00000541284 PPFIA3O75145 1194 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 ANTXR2P58335 489 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 ATP2B3Q16720 1220 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 NBPF3Q9H094 633 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 ATG3Q9NT62 314 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 GOLGA6L6A8MZA4 724 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 ADORA1P30542 326 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 CEBPZQ03701 1054 aaKnown RBP11.2□□□□□ -0.62
CNOT4-212ENST00000541284 H3BQV1 296 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 FOSBP53539 338 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 MB21D2Q8IYB1 491 aaPredicted RBP11.2□□□□□ -0.62
CNOT4-212ENST00000541284 MRFAP1L1Q96HT8 127 aa11.2□□□□□ -0.62
CNOT4-212ENST00000541284 ZBTB22O15209 634 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 RBM6P78332 1123 aaKnown RBP11.19□□□□□ -0.62
CNOT4-212ENST00000541284 NBPF11Q86T75 865 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 CCDC191Q8NCU4 936 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 GOLGA6L4A6NEF3 574 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 USP27XA6NNY8 438 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 CAVIN2O95810 425 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 CCZ1BP86790 482 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 CCZ1P86791 482 aaPredicted RBP11.19□□□□□ -0.62
CNOT4-212ENST00000541284 ATL3Q6DD88 541 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 TRIM5Q9C035 493 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 RTEL1Q9NZ71 1219 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 PCDHA7Q9UN72 937 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 ANKRD31Q8N7Z5 1873 aa11.19□□□□□ -0.62
CNOT4-212ENST00000541284 FAM160A1Q05DH4 1040 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 NCBP1Q09161 790 aaKnown RBP11.18□□□□□ -0.62
CNOT4-212ENST00000541284 NEUROD6Q96NK8 337 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 ABCC12Q96J65 1359 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 GUCY1B3Q02153 619 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 STX1AQ16623 288 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 LRRC8AQ8IWT6 810 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 ERCC4Q92889 916 aaPredicted RBP11.18□□□□□ -0.62
CNOT4-212ENST00000541284 CLIP2Q9UDT6 1046 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 THRAP3Q9Y2W1 955 aaKnown RBP11.18□□□□□ -0.62
CNOT4-212ENST00000541284 SPATA31A5Q5VU36 1347 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 SPATA31A7Q8IWB4 1347 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 IFIT1P09914 478 aaKnown RBP11.18□□□□□ -0.62
CNOT4-212ENST00000541284 BARGINQ6ZT62 677 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 ZBTB3Q9H5J0 574 aa11.18□□□□□ -0.62
CNOT4-212ENST00000541284 KIF28PB7ZC32 967 aa11.17□□□□□ -0.62
CNOT4-212ENST00000541284 CTAGE5O15320 804 aa11.17□□□□□ -0.62
CNOT4-212ENST00000541284 OTUD7BQ6GQQ9 843 aa11.17□□□□□ -0.62
CNOT4-212ENST00000541284 NYAP1Q6ZVC0 841 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms