RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 PARP2Q9UGN5 583 aa7.45□□□□□ -1.22
PRKDC-209ENST00000540819 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 RTCBQ9Y3I0 505 aaKnown RBP7.45□□□□□ -1.22
PRKDC-209ENST00000540819 PTCD1O75127 700 aaKnown RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 PSAPP07602 524 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 HSD3B2P26439 372 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 GRNP28799 593 aaKnown RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 NRLP54845 237 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 DAB2P98082 770 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 ARID5AQ03989 594 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 TAF7LQ5H9L4 462 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 TMED8Q6PL24 325 aaPredicted RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 EXOC8Q8IYI6 725 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 MYO19Q96H55 970 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 SSBP4Q9BWG4 385 aaPredicted RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 RBSNQ9H1K0 784 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 QTRT2Q9H974 415 aaKnown RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 PRDM16Q9HAZ2 1276 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 TLR7Q9NYK1 1049 aaKnown RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 MAGEC2Q9UBF1 373 aaPredicted RBP7.44□□□□□ -1.22
PRKDC-209ENST00000540819 SEPT3Q9UH03 358 aa7.44□□□□□ -1.22
PRKDC-209ENST00000540819 OPLAHO14841 1288 aa7.43□□□□□ -1.22
PRKDC-209ENST00000540819 HYAL3O43820 417 aaPredicted RBP7.43□□□□□ -1.22
PRKDC-209ENST00000540819 XYLBO75191 536 aa7.43□□□□□ -1.22
PRKDC-209ENST00000540819 GHRHP01286 108 aa7.43□□□□□ -1.22
PRKDC-209ENST00000540819 LDHBP07195 334 aaKnown RBP7.43□□□□□ -1.22
PRKDC-209ENST00000540819 CITED4Q96RK1 184 aa7.43□□□□□ -1.22
PRKDC-209ENST00000540819 LOC102724428A0A0B4J2F2 783 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 FAM13AO94988 1023 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 NPR3P17342 541 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 NOS3P29474 1203 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 SIK1P57059 783 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 PLAURQ03405 335 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 HSP90AB2PQ58FF8 381 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 DUSP9Q99956 384 aaKnown RBP7.42□□□□□ -1.22
PRKDC-209ENST00000540819 VTI1BQ9UEU0 232 aa7.42□□□□□ -1.22
PRKDC-209ENST00000540819 J3QW42 95 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 NDUFB5O43674 189 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 PARNO95453 639 aaKnown RBP7.41□□□□□ -1.22
PRKDC-209ENST00000540819 EGFRP00533 1210 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 TNNI2P48788 182 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 PSMD2Q13200 908 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 MTMR3Q13615 1198 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 JAZF1Q86VZ6 243 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 TREML1Q86YW5 311 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 HELQQ8TDG4 1101 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 DCAF11Q8TEB1 546 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 PLD4Q96BZ4 506 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 FAM161BQ96MY7 647 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 USP20Q9Y2K6 914 aa7.41□□□□□ -1.22
PRKDC-209ENST00000540819 PLCB3Q01970 1234 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 DSC3Q14574 896 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 NFE2L2Q16236 605 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 GDF6Q6KF10 455 aaPredicted RBP7.4□□□□□ -1.22
PRKDC-209ENST00000540819 IL22RA1Q8N6P7 574 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 MORC4Q8TE76 937 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 COL26A1Q96A83 441 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 AKTIPQ9H8T0 292 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 INPP5FQ9Y2H2 1132 aa7.4□□□□□ -1.22
PRKDC-209ENST00000540819 DEAF1O75398 565 aaPredicted RBP7.39□□□□□ -1.23
PRKDC-209ENST00000540819 STK10O94804 968 aaKnown RBP7.39□□□□□ -1.23
PRKDC-209ENST00000540819 PDE3BQ13370 1112 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 VPS37DQ86XT2 251 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 MEGF10Q96KG7 1140 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 DMRTB1Q96MA1 342 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 MKNK1Q9BUB5 465 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 MRPL18Q9H0U6 180 aaKnown RBP7.39□□□□□ -1.23
PRKDC-209ENST00000540819 LRFN2Q9ULH4 789 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 RNF112Q9ULX5 631 aa7.39□□□□□ -1.23
PRKDC-209ENST00000540819 DLL1O00548 723 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 MMP20O60882 483 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 MAPK8P45983 427 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 ATP2B2Q01814 1243 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 BMS1Q14692 1282 aaKnown RBP7.38□□□□□ -1.23
PRKDC-209ENST00000540819 PRR23CQ6ZRP0 262 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 SLC51AQ86UW1 340 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 NSUN5Q96P11 429 aaKnown RBP7.38□□□□□ -1.23
PRKDC-209ENST00000540819 SRA1Q9HD15 236 aaKnown RBP7.38□□□□□ -1.23
PRKDC-209ENST00000540819 CHPF2Q9P2E5 772 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 COL4A3BPQ9Y5P4 624 aa7.38□□□□□ -1.23
PRKDC-209ENST00000540819 EHHADHQ08426 723 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 FKBP5Q13451 457 aaPredicted RBP7.37□□□□□ -1.23
PRKDC-209ENST00000540819 COX20Q5RI15 118 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 MAP4K3Q8IVH8 894 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 ZNF654Q8IZM8 581 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 CACTIN-AS1Q8N1I8 211 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 TMEM130Q8N3G9 435 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 MRFAP1L1Q96HT8 127 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 FAN1Q9Y2M0 1017 aa7.37□□□□□ -1.23
PRKDC-209ENST00000540819 CCDC194A0A1B0GVG4 234 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 ALX3O95076 343 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 MAP4K4O95819 1239 aaPredicted RBP7.36□□□□□ -1.23
PRKDC-209ENST00000540819 XRCC5P13010 732 aaKnown RBP7.36□□□□□ -1.23
PRKDC-209ENST00000540819 SOX18P35713 384 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 NLRP13Q86W25 1043 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 TMC1Q8TDI8 760 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 KRTAP9-2Q9BYQ4 174 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 MUC3BQ9H195 1237 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 PCDH12Q9NPG4 1184 aa7.36□□□□□ -1.23
PRKDC-209ENST00000540819 FAM13BQ9NYF5 915 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms