RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 CEP83Q9Y592 693 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 EFCAB6Q5THR3 1501 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 UHRF1BP1LA0JNW5 1464 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 PSMC4P43686 418 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 PLCB3Q01970 1234 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 NOLC1Q14978 699 aaKnown RBP eCLIP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 PAXIP1Q6ZW49 1069 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC186Q7Z3E2 898 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 APBB1IPQ7Z5R6 666 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC63Q8NA47 563 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 SLU7O95391 586 aaKnown RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 ZSCAN23Q3MJ62 389 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 UBE3BQ7Z3V4 1068 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 NAP1L3Q99457 506 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 RBM27Q9P2N5 1060 aaKnown RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 KIDINS220Q9ULH0 1771 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 NOL3O60936 208 aaKnown RBP12.06□□□□□ -0.48
CLIP1-209ENST00000537178 ASIC1P78348 528 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 TTC22Q5TAA0 569 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 SIGLEC1Q9BZZ2 1709 aa12.06□□□□□ -0.48
CLIP1-209ENST00000537178 COL3A1P02461 1466 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-209ENST00000537178 ZWINTO95229 277 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 ANKRD24Q8TF21 1146 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 GOLGA1Q92805 767 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC42Q96M95 316 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 TXNDC16Q9P2K2 825 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 MAP3K2Q9Y2U5 619 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 MRVI1Q9Y6F6 885 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 GTF2A1P52655 376 aaPredicted RBP12.05□□□□□ -0.48
CLIP1-209ENST00000537178 RTN1Q16799 776 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 GSTA5Q7RTV2 222 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 RGS22Q8NE09 1264 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 TMX3Q96JJ7 454 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 EXOC5O00471 708 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 XRCC6P12956 609 aaKnown RBP eCLIP12.05□□□□□ -0.48
CLIP1-209ENST00000537178 MSANTD4Q8NCY6 345 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 ATP2A2P16615 1042 aaKnown RBP12.05□□□□□ -0.48
CLIP1-209ENST00000537178 CAPN2P17655 700 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 ALDH3A1P30838 453 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 ANO6Q4KMQ2 910 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 TCHPQ9BT92 498 aa12.05□□□□□ -0.48
CLIP1-209ENST00000537178 HS2ST1Q7LGA3 356 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 C6orf50Q9HD87 102 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 MTRF1LQ9UGC7 380 aaKnown RBP12.04□□□□□ -0.48
CLIP1-209ENST00000537178 ARHGAP31Q2M1Z3 1444 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 VAV2P52735 878 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 RAB11FIP4Q86YS3 637 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 TBC1D32Q96NH3 1257 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 TRIM75PA6NK02 468 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 TSPY3P0CV98 308 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 TSPY8P0CW00 308 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 PTGS1P23219 599 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 SEPT6Q14141 434 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 IFIT1BQ5T764 474 aaKnown RBP12.04□□□□□ -0.48
CLIP1-209ENST00000537178 CPLX4Q7Z7G2 160 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 USHBP1Q8N6Y0 703 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 JAKMIP2Q96AA8 810 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 MKRN1Q9UHC7 482 aaKnown RBP12.04□□□□□ -0.48
CLIP1-209ENST00000537178 PHF8Q9UPP1 1060 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 EEF2P13639 858 aaKnown RBP12.04□□□□□ -0.48
CLIP1-209ENST00000537178 SYT1P21579 422 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 ZGPATQ8N5A5 531 aaKnown RBP12.04□□□□□ -0.48
CLIP1-209ENST00000537178 TTC21BQ7Z4L5 1316 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 SETDB1Q15047 1291 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 IFNL2Q8IZJ0 200 aa12.04□□□□□ -0.48
CLIP1-209ENST00000537178 B4DLN1 442 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 CALML3P27482 149 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 MRPL12P52815 198 aaKnown RBP12.03□□□□□ -0.48
CLIP1-209ENST00000537178 TPD52P55327 224 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-209ENST00000537178 CCDC14Q49A88 953 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 NME9Q86XW9 330 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 FMNL3Q8IVF7 1028 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 RHPN1Q8TCX5 695 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 TUBGCP6Q96RT7 1819 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 BICDL2A1A5D9 508 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 PI4KAP2A4QPH2 592 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 PI4KAP1Q8N8J0 262 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 SELENOSQ9BQE4 189 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 ATP6V0A2Q9Y487 856 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 TTC16Q8NEE8 873 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 DACT1Q9NYF0 836 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 ZNF219Q9P2Y4 722 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-209ENST00000537178 KRT79Q5XKE5 535 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 AOPEPQ8N6M6 819 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 PPFIBP2Q8ND30 876 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 ZFP91Q96JP5 570 aaPredicted RBP12.03□□□□□ -0.48
CLIP1-209ENST00000537178 EMILIN1Q9Y6C2 1016 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 ADGRL1O94910 1474 aa12.03□□□□□ -0.48
CLIP1-209ENST00000537178 CEP57Q86XR8 500 aa12.02□□□□□ -0.48
CLIP1-209ENST00000537178 MICALL1Q8N3F8 863 aa12.02□□□□□ -0.48
CLIP1-209ENST00000537178 SMC1BQ8NDV3 1235 aa12.02□□□□□ -0.48
CLIP1-209ENST00000537178 ATP5J2-PTCD1G3V325 749 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 NCBP1Q09161 790 aaKnown RBP12.02□□□□□ -0.49
CLIP1-209ENST00000537178 CALCOCO2Q13137 446 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 CCDC152Q4G0S7 254 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 FAM169AQ9Y6X4 670 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 PPFIA3O75145 1194 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 SNX16P57768 344 aa12.02□□□□□ -0.49
CLIP1-209ENST00000537178 TNNC1P63316 161 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms