RNA–Protein interactions for RNA: ENST00000536823.5

YBX3-206, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 840 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-206ENST00000536823 ERVV-2B6SEH9 535 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 DIAPH1O60610 1272 aaKnown RBP9.47□□□□□ -0.89
YBX3-206ENST00000536823 HMGB2P26583 209 aaKnown RBP9.47□□□□□ -0.89
YBX3-206ENST00000536823 C1orf141Q5JVX7 400 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 TRERF1Q96PN7 1200 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 GOPCQ9HD26 462 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 LIMD1Q9UGP4 676 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 MKL2Q9ULH7 1088 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 NSFL1CQ9UNZ2 370 aaKnown RBP9.47□□□□□ -0.89
YBX3-206ENST00000536823 C4BP0C0L5 1744 aa9.47□□□□□ -0.89
YBX3-206ENST00000536823 SCN11AQ9UI33 1791 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 LOC102724428A0A0B4J2F2 783 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 LILRB3O75022 631 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 MX2P20592 715 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 SIK1P57059 783 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 CNGB1Q14028 1251 aaPredicted RBP9.46□□□□□ -0.9
YBX3-206ENST00000536823 GTPBP3Q969Y2 492 aaKnown RBP9.46□□□□□ -0.9
YBX3-206ENST00000536823 ASAP1Q9ULH1 1129 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 UBR3Q6ZT12 1888 aa9.46□□□□□ -0.9
YBX3-206ENST00000536823 ZNF831Q5JPB2 1677 aa9.45□□□□□ -0.9
YBX3-206ENST00000536823 HMOX1P09601 288 aa9.45□□□□□ -0.9
YBX3-206ENST00000536823 ERICH6Q7L0X2 663 aa9.45□□□□□ -0.9
YBX3-206ENST00000536823 ATG3Q9NT62 314 aa9.45□□□□□ -0.9
YBX3-206ENST00000536823 MRC1P22897 1456 aa9.45□□□□□ -0.9
YBX3-206ENST00000536823 H7C1W4 665 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 COL8A1P27658 744 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 ADD1P35611 737 aaKnown RBP9.44□□□□□ -0.9
YBX3-206ENST00000536823 RAB15P59190 212 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 TUSC1Q2TAM9 212 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 AKAP4Q5JQC9 854 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 KDF1Q8NAX2 398 aaPredicted RBP9.44□□□□□ -0.9
YBX3-206ENST00000536823 MAP3K5Q99683 1374 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 ADAMTS7Q9UKP4 1686 aa9.44□□□□□ -0.9
YBX3-206ENST00000536823 VIRMAQ69YN4 1812 aaKnown RBP9.43□□□□□ -0.9
YBX3-206ENST00000536823 RNF144AP50876 292 aaPredicted RBP9.43□□□□□ -0.9
YBX3-206ENST00000536823 CABP4P57796 275 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 ITPK1Q13572 414 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 COL23A1Q86Y22 540 aaPredicted RBP9.43□□□□□ -0.9
YBX3-206ENST00000536823 LINC00116Q8NCU8 138 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 FLAD1Q8NFF5 587 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 CFAP53Q96M91 514 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 ARXQ96QS3 562 aa9.43□□□□□ -0.9
YBX3-206ENST00000536823 GOLGB1Q14789 3259 aaKnown RBP9.43□□□□□ -0.9
YBX3-206ENST00000536823 COL5A3P25940 1745 aaPredicted RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 CICQ96RK0 1608 aaPredicted RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 U2SURPO15042 1029 aaKnown RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 LILRA1O75019 489 aa9.42□□□□□ -0.9
YBX3-206ENST00000536823 POLD1P28340 1107 aa9.42□□□□□ -0.9
YBX3-206ENST00000536823 PPP2R1AP30153 589 aa9.42□□□□□ -0.9
YBX3-206ENST00000536823 NBPF20Q3BBV1 942 aa9.42□□□□□ -0.9
YBX3-206ENST00000536823 RTL5Q5HYW3 569 aaPredicted RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 OXCT2Q9BYC2 517 aaPredicted RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 FHDC1Q9C0D6 1143 aaPredicted RBP9.42□□□□□ -0.9
YBX3-206ENST00000536823 FKBPLQ9UIM3 349 aa9.42□□□□□ -0.9
YBX3-206ENST00000536823 UTRNP46939 3433 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 RNMTO43148 476 aaKnown RBP9.41□□□□□ -0.9
YBX3-206ENST00000536823 SSFA2P28290 1259 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 MTHFSDQ2M296 383 aaKnown RBP9.41□□□□□ -0.9
YBX3-206ENST00000536823 MYSM1Q5VVJ2 828 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 AMIGO3Q86WK7 504 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 SLC4A9Q96Q91 983 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 SLC52A2Q9HAB3 445 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 RRAGCQ9HB90 399 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 DYRK1BQ9Y463 629 aa9.41□□□□□ -0.9
YBX3-206ENST00000536823 CNTNAP4Q9C0A0 1308 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 SHISA8B8ZZ34 492 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 GRIN2CQ14957 1233 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 LCE3BQ5TA77 95 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 MSL1Q68DK7 614 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 NFATC2IPQ8NCF5 419 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 GAS2L2Q8NHY3 880 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 GAS2L1Q99501 681 aaPredicted RBP9.4□□□□□ -0.9
YBX3-206ENST00000536823 SYT17Q9BSW7 474 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 RSPH6AQ9H0K4 717 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 NUDCQ9Y266 331 aa9.4□□□□□ -0.9
YBX3-206ENST00000536823 MYH14Q7Z406 1995 aaKnown RBP9.4□□□□□ -0.9
YBX3-206ENST00000536823 TJP1Q07157 1748 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 ERVH48-1M5A8F1 160 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 PTCD1O75127 700 aaKnown RBP9.39□□□□□ -0.91
YBX3-206ENST00000536823 PRKAR2BP31323 418 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 MAP2K3P46734 347 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 SH3D19Q5HYK7 790 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 LGR6Q9HBX8 967 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 KCPQ6ZWJ8 1503 aa9.39□□□□□ -0.91
YBX3-206ENST00000536823 UBR2Q8IWV8 1755 aa9.38□□□□□ -0.91
YBX3-206ENST00000536823 SMIM5Q71RC9 77 aa9.38□□□□□ -0.91
YBX3-206ENST00000536823 ADAM32Q8TC27 787 aa9.38□□□□□ -0.91
YBX3-206ENST00000536823 SIPA1L3O60292 1781 aaPredicted RBP9.37□□□□□ -0.91
YBX3-206ENST00000536823 ZC3H4Q9UPT8 1303 aaKnown RBP9.37□□□□□ -0.91
YBX3-206ENST00000536823 GNAT3A8MTJ3 354 aa9.37□□□□□ -0.91
YBX3-206ENST00000536823 U2AF1L5P0DN76 240 aaPredicted RBP9.37□□□□□ -0.91
YBX3-206ENST00000536823 U2AF1Q01081 240 aaKnown RBP eCLIP9.37□□□□□ -0.91
YBX3-206ENST00000536823 PTK2Q05397 1052 aa9.37□□□□□ -0.91
YBX3-206ENST00000536823 OCSTAMPQ9BR26 566 aa9.37□□□□□ -0.91
YBX3-206ENST00000536823 RTCBQ9Y3I0 505 aaKnown RBP9.37□□□□□ -0.91
YBX3-206ENST00000536823 CEMIPQ8WUJ3 1361 aa9.37□□□□□ -0.91
YBX3-206ENST00000536823 C4AP0C0L4 1744 aa9.36□□□□□ -0.91
YBX3-206ENST00000536823 C1QTNF9BB2RNN3 333 aa9.36□□□□□ -0.91
YBX3-206ENST00000536823 RPS6KA4O75676 772 aa9.36□□□□□ -0.91
YBX3-206ENST00000536823 ITGB7P26010 798 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms