RNA–Protein interactions for RNA: ENST00000531474.2

NXF1-209, Transcript of nuclear RNA export factor 1, human

TSL 3

Gene NXF1, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF1-209	ENST00000531474	STAP2	Q9UGK3	403 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	IQSEC3	Q9UPP2	1182 aa	Predicted RBP	11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	ZNF541	Q9H0D2	1346 aa		11.48	□□□□□ -0.57
NXF1-209	ENST00000531474	ZC3H4	Q9UPT8	1303 aa	Known RBP	11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	FZD9	O00144	591 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	FRAT2	O75474	233 aa	Predicted RBP	11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	PHKA1	P46020	1223 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	PDE1A	P54750	535 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	TBC1D9	Q6ZT07	1266 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	PODN	Q7Z5L7	613 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	KCNQ5	Q9NR82	932 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	GNL3L	Q9NVN8	582 aa	Known RBP	11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	TLR7	Q9NYK1	1049 aa	Known RBP	11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	DBNL	Q9UJU6	430 aa	Known RBP	11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	GJA3	Q9Y6H8	435 aa		11.47	□□□□□ -0.57
NXF1-209	ENST00000531474	SBF1	O95248	1867 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	ARAP2	Q8WZ64	1704 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	IL1R1	P14778	569 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	CXCL9	Q07325	125 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	CHAF1A	Q13111	956 aa	Predicted RBP	11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	TNIP1	Q15025	636 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	CCDC102B	Q68D86	513 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	CIAPIN1	Q6FI81	312 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	TDRD7	Q8NHU6	1098 aa	Known RBP	11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	RNF216	Q9NWF9	866 aa	Predicted RBP	11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	JAG2	Q9Y219	1238 aa		11.46	□□□□□ -0.57
NXF1-209	ENST00000531474	USP17L3	A6NCW0	530 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	USP17L4	A6NCW7	530 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	PSMD14	O00487	310 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	EPB41L2	O43491	1005 aa	Known RBP	11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	REC8	O95072	547 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	MX1	P20591	662 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	GTF2I	P78347	998 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	CCDC158	Q5M9N0	1113 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	TTC39A	Q5SRH9	613 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	DPY19L2	Q6NUT2	758 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	USP17L1	Q7RTZ2	530 aa		11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.45	□□□□□ -0.58
NXF1-209	ENST00000531474	CCDC88A	Q3V6T2	1871 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	DDN	O94850	711 aa	Predicted RBP	11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	UQCRFS1P1	P0C7P4	283 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	GSPT1	P15170	499 aa	Known RBP	11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	SDS	P20132	328 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	TTLL5	Q6EMB2	1281 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	ZNF526	Q8TF50	670 aa	Predicted RBP	11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	SNX21	Q969T3	373 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	GPATCH3	Q96I76	525 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	MXD3	Q9BW11	206 aa		11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	DICER1	Q9UPY3	1922 aa	Known RBP	11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	COL1A1	P02452	1464 aa	Predicted RBP	11.44	□□□□□ -0.58
NXF1-209	ENST00000531474	FAM205A	Q6ZU69	1335 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	SALL3	Q9BXA9	1300 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	GLTPD2	A6NH11	291 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	SEMA3E	O15041	775 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	ERC2	O15083	957 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	YY1	P25490	414 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	GMPS	P49915	693 aa	Predicted RBP	11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	RASGRF1	Q13972	1273 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	DACT2	Q5SW24	774 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	STRIP1	Q5VSL9	837 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	GPC2	Q8N158	579 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	DENND2A	Q9ULE3	1009 aa		11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	ZBTB12	Q9Y330	459 aa	Predicted RBP	11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	GOLGB1	Q14789	3259 aa	Known RBP	11.43	□□□□□ -0.58
NXF1-209	ENST00000531474	TTC41P	Q6P2S7	1318 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	VIL1	P09327	827 aa	Known RBP	11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	ARID4A	P29374	1257 aa	Predicted RBP	11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	SCARF1	Q14162	830 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	MFSD14B	Q5SR56	506 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	HSCB	Q8IWL3	235 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	SPATA5	Q8NB90	893 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	OTUD7A	Q8TE49	926 aa	Predicted RBP	11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	SNRK	Q9NRH2	765 aa		11.42	□□□□□ -0.58
NXF1-209	ENST00000531474	CHD4	Q14839	1912 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	LMOD1	P29536	600 aa	Predicted RBP	11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	MCAM	P43121	646 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	TSHZ3	Q63HK5	1081 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	PI16	Q6UXB8	463 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	CERS5	Q8N5B7	392 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	WDR66	Q8TBY9	1149 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	TBC1D22A	Q8WUA7	517 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	ZNF512B	Q96KM6	892 aa	Predicted RBP	11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	ECHDC1	Q9NTX5	307 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	HMG20B	Q9P0W2	317 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	SCN9A	Q15858	1988 aa		11.41	□□□□□ -0.58
NXF1-209	ENST00000531474	PDS5A	Q29RF7	1337 aa	Known RBP	11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	MYO3B	Q8WXR4	1341 aa		11.4	□□□□□ -0.58
NXF1-209	ENST00000531474		F8W031	263 aa	Predicted RBP	11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	GLRX3	O76003	335 aa	Known RBP	11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	RPS12	P25398	132 aa	Known RBP	11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	KIAA0825	Q8IV33	1275 aa		11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	AGBL3	Q8NEM8	1001 aa		11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	USP26	Q9BXU7	913 aa		11.4	□□□□□ -0.58
NXF1-209	ENST00000531474	TRIM6-TRIM34	B2RNG4	842 aa		11.39	□□□□□ -0.59
NXF1-209	ENST00000531474	USP17L8	P0C7I0	530 aa		11.39	□□□□□ -0.59
NXF1-209	ENST00000531474	ATP5J	P18859	108 aa		11.39	□□□□□ -0.59
NXF1-209	ENST00000531474	MCC	P23508	829 aa		11.39	□□□□□ -0.59
NXF1-209	ENST00000531474	ZAP70	P43403	619 aa		11.39	□□□□□ -0.59
NXF1-209	ENST00000531474	SCNN1D	P51172	638 aa		11.39	□□□□□ -0.59

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