RNA–Protein interactions for RNA: ENST00000530660.5

PCF11-204, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 2

Gene PCF11, Length 3,309 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-204ENST00000530660 ADD1P35611 737 aaKnown RBP16.25■□□□□ 0.19
PCF11-204ENST00000530660 ME1P48163 572 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 RAB21Q9UL25 225 aa16.25■□□□□ 0.19
PCF11-204ENST00000530660 A0A1B0GVL5 298 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 GIGYF1O75420 1035 aaPredicted RBP16.24■□□□□ 0.19
PCF11-204ENST00000530660 GPTP24298 496 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 TMEM139Q8IV31 216 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 COG3Q96JB2 828 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 USP28Q96RU2 1077 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 PPFIA3O75145 1194 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 NECTIN1Q15223 517 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 FAM107BQ9H098 131 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 RBM8AQ9Y5S9 174 aaKnown RBP16.24■□□□□ 0.19
PCF11-204ENST00000530660 NCKAP5LQ9HCH0 1330 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 NBPF20Q3BBV1 942 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 CFAP100Q494V2 611 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 CREB3L3Q68CJ9 461 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 SIL1Q9H173 461 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 CAPN7Q9Y6W3 813 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 ADGRL3Q9HAR2 1447 aa16.24■□□□□ 0.19
PCF11-204ENST00000530660 EBAG9O00559 213 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 C21orf2O43822 256 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 INPP5BP32019 993 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 UBASH3AP57075 661 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 AOX1Q06278 1338 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 CTCFLQ8NI51 663 aaPredicted RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 PREX1Q8TCU6 1659 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 SURF6O75683 361 aaKnown RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 SYF2O95926 243 aaKnown RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 SEMA3FQ13275 785 aa16.23■□□□□ 0.19
PCF11-204ENST00000530660 TOB2Q14106 344 aaPredicted RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 EIF4A2Q14240 407 aaKnown RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 CALR3Q96L12 384 aaKnown RBP16.23■□□□□ 0.19
PCF11-204ENST00000530660 ARHGAP6O43182 974 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 FOXO3O43524 673 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 SERPINC1P01008 464 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 SETQ01105 290 aaPredicted RBP16.22■□□□□ 0.19
PCF11-204ENST00000530660 TSPYL4Q9UJ04 414 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 RCOR1Q9UKL0 485 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 A0A0U1RQJ8 604 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 INHBEP58166 350 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.22■□□□□ 0.19
PCF11-204ENST00000530660 PDILTQ8N807 584 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 IGSF22Q8N9C0 903 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 ATRIPQ8WXE1 791 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 HSD3B7Q9H2F3 369 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 KIAA1468Q9P260 1216 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 NEDD9Q14511 834 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 HSP90AA4PQ58FG1 418 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 MSANTD4Q8NCY6 345 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 LZTFL1Q9NQ48 299 aa16.22■□□□□ 0.19
PCF11-204ENST00000530660 TOP1P11387 765 aaKnown RBP16.21■□□□□ 0.19
PCF11-204ENST00000530660 PRPF38AQ8NAV1 312 aaKnown RBP16.21■□□□□ 0.19
PCF11-204ENST00000530660 ZKSCAN4Q969J2 545 aaPredicted RBP16.21■□□□□ 0.19
PCF11-204ENST00000530660 GDAP1L1Q96MZ0 367 aa16.21■□□□□ 0.19
PCF11-204ENST00000530660 KAT14Q9H8E8 782 aa16.21■□□□□ 0.19
PCF11-204ENST00000530660 SAMM50Q9Y512 469 aa16.21■□□□□ 0.19
PCF11-204ENST00000530660 BLOC1S2Q6QNY1 142 aa16.21■□□□□ 0.19
PCF11-204ENST00000530660 CABS1Q96KC9 395 aa16.21■□□□□ 0.19
PCF11-204ENST00000530660 BAG1Q99933 345 aaPredicted RBP16.21■□□□□ 0.19
PCF11-204ENST00000530660 MRPL44Q9H9J2 332 aaKnown RBP16.21■□□□□ 0.19
PCF11-204ENST00000530660 ATP7BP35670 1465 aa16.21■□□□□ 0.18
PCF11-204ENST00000530660 H0YHG0 523 aa16.21■□□□□ 0.18
PCF11-204ENST00000530660 PRPF6O94906 941 aaKnown RBP16.21■□□□□ 0.18
PCF11-204ENST00000530660 ADKP55263 362 aaKnown RBP16.21■□□□□ 0.18
PCF11-204ENST00000530660 MSL3Q8N5Y2 521 aaKnown RBP16.21■□□□□ 0.18
PCF11-204ENST00000530660 VEZTQ9HBM0 779 aa16.21■□□□□ 0.18
PCF11-204ENST00000530660 MCM8Q9UJA3 840 aa16.21■□□□□ 0.18
PCF11-204ENST00000530660 FRMD3A2A2Y4 597 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 NDUFA8P51970 172 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 MTF1Q14872 753 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 FMR1NBQ8N0W7 255 aaPredicted RBP16.2■□□□□ 0.18
PCF11-204ENST00000530660 JMYQ8N9B5 988 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 SMARCC1Q92922 1105 aaPredicted RBP16.2■□□□□ 0.18
PCF11-204ENST00000530660 SETD1AO15047 1707 aaKnown RBP16.2■□□□□ 0.18
PCF11-204ENST00000530660 CRB1P82279 1406 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 FLIIQ13045 1269 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 MTX1Q13505 466 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 FCHSD1Q86WN1 690 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 RHPN1Q8TCX5 695 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 ACBD3Q9H3P7 528 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 FANCLQ9NW38 375 aa16.2■□□□□ 0.18
PCF11-204ENST00000530660 SOS1Q07889 1333 aaPredicted RBP16.19■□□□□ 0.18
PCF11-204ENST00000530660 KIRREL3Q8IZU9 778 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 BCAS4Q8TDM0 211 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 TBC1D22AQ8WUA7 517 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 KCNB2Q92953 911 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 STK31Q9BXU1 1019 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 MYO5BQ9ULV0 1848 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 CDHR2Q9BYE9 1310 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 EDC4Q6P2E9 1401 aaKnown RBP16.19■□□□□ 0.18
PCF11-204ENST00000530660 SLC27A2O14975 620 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 IRAK1P51617 712 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 SARNPP82979 210 aaKnown RBP16.19■□□□□ 0.18
PCF11-204ENST00000530660 C11orf91Q3C1V1 193 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 STAG1Q8WVM7 1258 aa16.19■□□□□ 0.18
PCF11-204ENST00000530660 NF2P35240 595 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 RDXP35241 583 aaKnown RBP16.18■□□□□ 0.18
PCF11-204ENST00000530660 VSTM4Q8IW00 320 aa16.18■□□□□ 0.18
PCF11-204ENST00000530660 RUFY2Q8WXA3 655 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms