RNA–Protein interactions for RNA: ENST00000526313.5

USH1C-204, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best)

Gene USH1C, Length 2,149 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-204ENST00000526313 DTNBO60941 627 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 CHRNDQ07001 517 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 STK3Q13188 491 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 RASGRF1Q13972 1273 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 FOXD4L6Q3SYB3 417 aaPredicted RBP18.85■□□□□ 0.61
USH1C-204ENST00000526313 FOXD4L3Q6VB84 417 aaPredicted RBP18.85■□□□□ 0.61
USH1C-204ENST00000526313 ZNF274Q96GC6 653 aaPredicted RBP18.85■□□□□ 0.61
USH1C-204ENST00000526313 GJD4Q96KN9 370 aaPredicted RBP18.85■□□□□ 0.61
USH1C-204ENST00000526313 LRRC2Q9BYS8 371 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 GDPD2Q9HCC8 539 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 LY75O60449 1722 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 SCRN1Q12765 414 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 TBC1D9BQ66K14 1250 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 C3orf67Q6ZVT6 689 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 ZNF532Q9HCE3 1301 aa18.85■□□□□ 0.61
USH1C-204ENST00000526313 COL24A1Q17RW2 1714 aa18.84■□□□□ 0.61
USH1C-204ENST00000526313 WWC3Q9ULE0 1092 aa18.84■□□□□ 0.61
USH1C-204ENST00000526313 CASZ1Q86V15 1759 aa18.83■□□□□ 0.61
USH1C-204ENST00000526313 IDH1O75874 414 aaKnown RBP18.83■□□□□ 0.61
USH1C-204ENST00000526313 MB21D2Q8IYB1 491 aaPredicted RBP18.83■□□□□ 0.61
USH1C-204ENST00000526313 BSDC1Q9NW68 430 aaPredicted RBP18.83■□□□□ 0.61
USH1C-204ENST00000526313 WDR19Q8NEZ3 1342 aa18.83■□□□□ 0.61
USH1C-204ENST00000526313 A0A1B0GUL6 1792 aa18.83■□□□□ 0.6
USH1C-204ENST00000526313 VPS37CA5D8V6 355 aaPredicted RBP18.83■□□□□ 0.6
USH1C-204ENST00000526313 ALX1Q15699 326 aa18.83■□□□□ 0.6
USH1C-204ENST00000526313 CDC37L1Q7L3B6 337 aa18.83■□□□□ 0.6
USH1C-204ENST00000526313 SBF2Q86WG5 1849 aa18.83■□□□□ 0.6
USH1C-204ENST00000526313 JAK2O60674 1132 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 UBE2HP62256 183 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 DNM1Q05193 864 aaKnown RBP18.82■□□□□ 0.6
USH1C-204ENST00000526313 APOBRQ0VD83 1088 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 STRBPQ96SI9 672 aaKnown RBP18.82■□□□□ 0.6
USH1C-204ENST00000526313 NYXQ9GZU5 481 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 ZNF804BA4D1E1 1349 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 TAF1LQ8IZX4 1826 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 ZMYM6O95789 1325 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 ZNF213O14771 459 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 BCAMP50895 628 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 FGD1P98174 961 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 CSPP1Q1MSJ5 1256 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 LRSAM1Q6UWE0 723 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 ANKRD18AQ8IVF6 992 aa18.82■□□□□ 0.6
USH1C-204ENST00000526313 CCNL1Q9UK58 526 aaPredicted RBP18.82■□□□□ 0.6
USH1C-204ENST00000526313 CTDNEP1O95476 244 aa18.81■□□□□ 0.6
USH1C-204ENST00000526313 PDIA3P30101 505 aaKnown RBP18.81■□□□□ 0.6
USH1C-204ENST00000526313 MAP3K12Q12852 859 aa18.81■□□□□ 0.6
USH1C-204ENST00000526313 UBE4AQ14139 1066 aa18.81■□□□□ 0.6
USH1C-204ENST00000526313 NSUN7Q8NE18 718 aaKnown RBP18.81■□□□□ 0.6
USH1C-204ENST00000526313 CHMP4CQ96CF2 233 aa18.81■□□□□ 0.6
USH1C-204ENST00000526313 NBPF3Q9H094 633 aa18.81■□□□□ 0.6
USH1C-204ENST00000526313 HAND2P61296 217 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 SMIM5Q71RC9 77 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 SYAP1Q96A49 352 aaPredicted RBP18.8■□□□□ 0.6
USH1C-204ENST00000526313 SALL1Q9NSC2 1324 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 MCM5P33992 734 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 NCOA7Q8NI08 942 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 CERKQ8TCT0 537 aa18.8■□□□□ 0.6
USH1C-204ENST00000526313 SRP68Q9UHB9 627 aaKnown RBP18.8■□□□□ 0.6
USH1C-204ENST00000526313 RTCBQ9Y3I0 505 aaKnown RBP18.8■□□□□ 0.6
USH1C-204ENST00000526313 GNPATO15228 680 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 HMGN5P82970 282 aaKnown RBP18.79■□□□□ 0.6
USH1C-204ENST00000526313 SETDB2Q96T68 719 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 MINPP1Q9UNW1 487 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 ANTXR2P58335 489 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 FAM182BQ5T319 152 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 AMIGO3Q86WK7 504 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 KLHL34Q8N239 644 aa18.79■□□□□ 0.6
USH1C-204ENST00000526313 ELP1O95163 1332 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 AFF2P51816 1311 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 PATL2C9JE40 543 aaKnown RBP18.78■□□□□ 0.6
USH1C-204ENST00000526313 ZPR1O75312 459 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 BICDL1Q6ZP65 573 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 CHST3Q7LGC8 479 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 MAGEB6Q8N7X4 407 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 ARHGEF1Q92888 912 aaKnown RBP18.78■□□□□ 0.6
USH1C-204ENST00000526313 TAF1P21675 1872 aa18.78■□□□□ 0.6
USH1C-204ENST00000526313 SYCE3A1L190 88 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 FIBPO43427 364 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 PRC1O43663 620 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 KRT85P78386 507 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 NAA16Q6N069 864 aaPredicted RBP18.77■□□□□ 0.6
USH1C-204ENST00000526313 CELF1Q92879 486 aaKnown RBP18.77■□□□□ 0.6
USH1C-204ENST00000526313 AIDAQ96BJ3 306 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 RBSNQ9H1K0 784 aa18.77■□□□□ 0.6
USH1C-204ENST00000526313 PNPLA7Q6ZV29 1317 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 C4BP0C0L5 1744 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 NASPP49321 788 aaPredicted RBP18.76■□□□□ 0.59
USH1C-204ENST00000526313 RESTQ13127 1097 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 TPTE2Q6XPS3 522 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 NLRP3Q96P20 1036 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 GPHNQ9NQX3 736 aaPredicted RBP18.76■□□□□ 0.59
USH1C-204ENST00000526313 PTPDC1A2A3K4 754 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 ZBTB22O15209 634 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 GTF2E1P29083 439 aaPredicted RBP18.76■□□□□ 0.59
USH1C-204ENST00000526313 HSPA1LP34931 641 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 MEX3CQ5U5Q3 659 aaKnown RBP18.76■□□□□ 0.59
USH1C-204ENST00000526313 FERMT3Q86UX7 667 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 NBPF5PQ86XG9 351 aaPredicted RBP18.76■□□□□ 0.59
USH1C-204ENST00000526313 TBC1D10CQ8IV04 446 aa18.76■□□□□ 0.59
USH1C-204ENST00000526313 ZSCAN16Q9H4T2 348 aaPredicted RBP18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms