RNA–Protein interactions for RNA: ENST00000523867.5

HDAC9-227, Transcript of histone deacetylase 9, humanhuman

TSL 1 (best)

Gene HDAC9, Length 2,640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-227ENST00000523867 ZSCAN31Q96LW9 406 aaPredicted RBP8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CHPF2Q9P2E5 772 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 CYP46A1Q9Y6A2 500 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 TCHHQ07283 1943 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 SPATA31A6Q5VVP1 1343 aa8.53□□□□□ -1.04
HDAC9-227ENST00000523867 PLA2G4AP47712 749 aa8.52□□□□□ -1.04
HDAC9-227ENST00000523867 USHBP1Q8N6Y0 703 aa8.52□□□□□ -1.04
HDAC9-227ENST00000523867 EXOC4Q96A65 974 aa8.52□□□□□ -1.04
HDAC9-227ENST00000523867 ST7Q9NRC1 585 aa8.52□□□□□ -1.04
HDAC9-227ENST00000523867 SH2B1Q9NRF2 756 aaPredicted RBP8.52□□□□□ -1.04
HDAC9-227ENST00000523867 USP42Q9H9J4 1324 aaKnown RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 VPS37CA5D8V6 355 aaPredicted RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 PNMA6AP0CW24 399 aaPredicted RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 EIF4A1P60842 406 aaKnown RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 PTH1RQ03431 593 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 NAA30Q147X3 362 aaPredicted RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 ADCK5Q3MIX3 580 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 ABTB2Q8N961 1025 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 C16orf45Q96MC5 204 aaPredicted RBP8.52□□□□□ -1.05
HDAC9-227ENST00000523867 KCND1Q9NSA2 647 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 ECHDC1Q9NTX5 307 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 MTMR6Q9Y217 621 aa8.52□□□□□ -1.05
HDAC9-227ENST00000523867 CFAP69A5D8W1 941 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 NEMFO60524 1076 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 RPS6KA5O75582 802 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ZRANB2O95218 330 aaKnown RBP eCLIP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ZKSCAN1P17029 563 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 LIG1P18858 919 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 MAP2K2P36507 400 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 SSR1P43307 286 aaKnown RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 EVA1CP58658 441 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 PPP4CP60510 307 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 NBPF10Q6P3W6 841 aaKnown RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 MMS22LQ6ZRQ5 1243 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 NEK11Q8NG66 645 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 FUCA2Q9BTY2 467 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 TM6SF1Q9BZW5 370 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ZSWIM6Q9HCJ5 1215 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 TOMM22Q9NS69 142 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ARGLU1Q9NWB6 273 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 LCMT1Q9UIC8 334 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ZNF215Q9UL58 517 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 N4BP2Q86UW6 1770 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 PHLPP1O60346 1717 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 AHDC1Q5TGY3 1603 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 DTNBO60941 627 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 TUBB4AP04350 444 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 HOXB7P09629 217 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 IFIT2P09913 472 aaKnown RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ZKSCAN8Q15776 578 aaPredicted RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 PUS10Q3MIT2 529 aaKnown RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 LRCH2Q5VUJ6 765 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 PACS2Q86VP3 889 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ANKRD20A12PQ8NF67 263 aa8.51□□□□□ -1.05
HDAC9-227ENST00000523867 TPX2Q9ULW0 747 aaKnown RBP8.51□□□□□ -1.05
HDAC9-227ENST00000523867 ANXA1P04083 346 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 CCDC192P0DO97 292 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 TPD52L1Q16890 204 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 C4orf46Q504U0 113 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 RNF217Q8TC41 542 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 TBC1D22AQ8WUA7 517 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 LGR6Q9HBX8 967 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 C9orf78Q9NZ63 289 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 PIK3C2AO00443 1686 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ACTN2P35609 894 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 MTA1Q13330 715 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ELF2Q15723 593 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ME3Q16798 604 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 C11orf91Q3C1V1 193 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 NAALADL2Q58DX5 795 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 LARP1BQ659C4 914 aaKnown RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 FILIP1Q7Z7B0 1213 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ANKRD23Q86SG2 305 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ERC1Q8IUD2 1116 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 SPC24Q8NBT2 197 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 DDX54Q8TDD1 881 aaKnown RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 PUF60Q9UHX1 559 aaKnown RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 TBX22Q9Y458 520 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 CEMIPQ8WUJ3 1361 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 TPM1P09493 284 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 KRT85P78386 507 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 TEFQ10587 303 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 MTX1Q13505 466 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 NECTIN1Q15223 517 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 ZNF772Q68DY9 489 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 NYAP1Q6ZVC0 841 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 NECAB1Q8N987 351 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 HELBQ8NG08 1087 aaPredicted RBP8.5□□□□□ -1.05
HDAC9-227ENST00000523867 KCNB2Q92953 911 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 SMARCE1Q969G3 411 aa8.5□□□□□ -1.05
HDAC9-227ENST00000523867 CHD2O14647 1828 aaKnown RBP8.49□□□□□ -1.05
HDAC9-227ENST00000523867 COL16A1Q07092 1604 aaPredicted RBP8.49□□□□□ -1.05
HDAC9-227ENST00000523867 BTBD11A6QL63 1104 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 KCNQ3O43525 872 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 ZNF16P17020 682 aaPredicted RBP8.49□□□□□ -1.05
HDAC9-227ENST00000523867 PTGS1P23219 599 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 AACSQ86V21 672 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 AMOTL1Q8IY63 956 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 JMYQ8N9B5 988 aa8.49□□□□□ -1.05
HDAC9-227ENST00000523867 GTF3C6Q969F1 213 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms