RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 CDC14CA4D256 554 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 EIF2AK2P19525 551 aaKnown RBP11.11□□□□□ -0.63
LSM1-202ENST00000520286 GARTP22102 1010 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 LMNB2Q03252 620 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 AGMOQ6ZNB7 445 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 POP1Q99575 1024 aaKnown RBP11.11□□□□□ -0.63
LSM1-202ENST00000520286 MUC3BQ9H195 1237 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 GINM1Q9NU53 330 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 CADPSQ9ULU8 1353 aa11.11□□□□□ -0.63
LSM1-202ENST00000520286 GREM1O60565 184 aa11.1□□□□□ -0.63
LSM1-202ENST00000520286 PAGE1O75459 146 aa11.1□□□□□ -0.63
LSM1-202ENST00000520286 SMNDC1O75940 238 aaKnown RBP eCLIP11.1□□□□□ -0.63
LSM1-202ENST00000520286 ZNF468Q5VIY5 522 aaPredicted RBP11.1□□□□□ -0.63
LSM1-202ENST00000520286 CEP135Q66GS9 1140 aa11.1□□□□□ -0.63
LSM1-202ENST00000520286 GOLM1Q8NBJ4 401 aa11.1□□□□□ -0.63
LSM1-202ENST00000520286 PUS7Q96PZ0 661 aaKnown RBP11.1□□□□□ -0.63
LSM1-202ENST00000520286 TMEM39AQ9NV64 488 aa11.1□□□□□ -0.63
LSM1-202ENST00000520286 GMPR2Q9P2T1 348 aaKnown RBP11.1□□□□□ -0.63
LSM1-202ENST00000520286 TFE3P19532 575 aaPredicted RBP11.09□□□□□ -0.63
LSM1-202ENST00000520286 RPS26P62854 115 aaKnown RBP11.09□□□□□ -0.63
LSM1-202ENST00000520286 PCNX4Q63HM2 1172 aa11.09□□□□□ -0.63
LSM1-202ENST00000520286 BSNDQ8WZ55 320 aa11.09□□□□□ -0.63
LSM1-202ENST00000520286 ZSWIM4Q9H7M6 989 aa11.09□□□□□ -0.63
LSM1-202ENST00000520286 UBP1Q9NZI7 540 aa11.09□□□□□ -0.63
LSM1-202ENST00000520286 PPFIA3O75145 1194 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 SIN3BO75182 1162 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 BMP4P12644 408 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 SOX9P48436 509 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 ZNF157P51786 506 aaPredicted RBP11.08□□□□□ -0.64
LSM1-202ENST00000520286 NFX1Q12986 1120 aaKnown RBP11.08□□□□□ -0.64
LSM1-202ENST00000520286 COL9A2Q14055 689 aaPredicted RBP11.08□□□□□ -0.64
LSM1-202ENST00000520286 CKAP2LQ8IYA6 745 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 VWA5B2Q8N398 1253 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 MICALL1Q8N3F8 863 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 OSBPL2Q9H1P3 480 aa11.08□□□□□ -0.64
LSM1-202ENST00000520286 CLEC4MQ9H2X3 399 aaPredicted RBP11.08□□□□□ -0.64
LSM1-202ENST00000520286 C2CD2LO14523 706 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 SNRPBP14678 240 aaKnown RBP11.07□□□□□ -0.64
LSM1-202ENST00000520286 CPB1P15086 417 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 PCBP4P57723 403 aaKnown RBP11.07□□□□□ -0.64
LSM1-202ENST00000520286 PPP2R3AQ06190 1150 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 SV2AQ7L0J3 742 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 FAM35AQ86V20 835 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 PIF1Q9H611 641 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 ZNF408Q9H9D4 720 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 STRIP2Q9ULQ0 834 aa11.07□□□□□ -0.64
LSM1-202ENST00000520286 LMNB1P20700 586 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 APOBRQ0VD83 1088 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 TRIM42Q8IWZ5 723 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 NKD1Q969G9 470 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 PLD4Q96BZ4 506 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 SAMM50Q9Y512 469 aa11.06□□□□□ -0.64
LSM1-202ENST00000520286 HMGB1P09429 215 aaKnown RBP11.05□□□□□ -0.64
LSM1-202ENST00000520286 PCDH1Q08174 1060 aa11.05□□□□□ -0.64
LSM1-202ENST00000520286 FAM196AQ6ZSG2 479 aa11.05□□□□□ -0.64
LSM1-202ENST00000520286 TNFRSF25Q93038 417 aa11.05□□□□□ -0.64
LSM1-202ENST00000520286 SLC6A14Q9UN76 642 aa11.05□□□□□ -0.64
LSM1-202ENST00000520286 MRVI1Q9Y6F6 885 aa11.05□□□□□ -0.64
LSM1-202ENST00000520286 PTPRAP18433 802 aa11.04□□□□□ -0.64
LSM1-202ENST00000520286 CRKP46108 304 aa11.04□□□□□ -0.64
LSM1-202ENST00000520286 PERM1Q5SV97 790 aa11.04□□□□□ -0.64
LSM1-202ENST00000520286 CPLX3Q8WVH0 158 aa11.04□□□□□ -0.64
LSM1-202ENST00000520286 AVENQ9NQS1 362 aaPredicted RBP11.04□□□□□ -0.64
LSM1-202ENST00000520286 SOX13Q9UN79 622 aa11.04□□□□□ -0.64
LSM1-202ENST00000520286 TMA7Q9Y2S6 64 aaKnown RBP11.04□□□□□ -0.64
LSM1-202ENST00000520286 B3GALT4O96024 378 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 HSP90B1P14625 803 aaKnown RBP11.03□□□□□ -0.64
LSM1-202ENST00000520286 ETFBP38117 255 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 ZNF423Q2M1K9 1284 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 ELMSAN1Q6PJG2 1045 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 ADAMTSL4Q6UY14 1074 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 SMG9Q9H0W8 520 aaKnown RBP11.03□□□□□ -0.64
LSM1-202ENST00000520286 MIR1-1HGQ9H1L0 117 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 PCDHB5Q9Y5E4 795 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 ROBO2Q9HCK4 1378 aa11.03□□□□□ -0.64
LSM1-202ENST00000520286 TLDC2A0PJX2 215 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 F13A1P00488 732 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 BMP6P22004 513 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 NME2P22392 152 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 BMS1Q14692 1282 aaKnown RBP11.02□□□□□ -0.65
LSM1-202ENST00000520286 NBPF6Q5VWK0 638 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 BNC2Q6ZN30 1099 aaPredicted RBP11.02□□□□□ -0.65
LSM1-202ENST00000520286 VN1R5Q7Z5H4 357 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 CCDC84Q86UT8 332 aaPredicted RBP11.02□□□□□ -0.65
LSM1-202ENST00000520286 SLITRK4Q8IW52 837 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 NANOS1Q8WY41 292 aaKnown RBP11.02□□□□□ -0.65
LSM1-202ENST00000520286 NBPF4Q96M43 638 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 NAGPAQ9UK23 515 aa11.02□□□□□ -0.65
LSM1-202ENST00000520286 MX2P20592 715 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 ADH7P40394 386 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 SEZ6Q53EL9 994 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 RASIP1Q5U651 963 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 GATAD2BQ8WXI9 593 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 JARID2Q92833 1246 aaPredicted RBP11.01□□□□□ -0.65
LSM1-202ENST00000520286 LACRTQ9GZZ8 138 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 ADAM19Q9H013 955 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 CYP8B1Q9UNU6 501 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 TRIM33Q9UPN9 1127 aa11.01□□□□□ -0.65
LSM1-202ENST00000520286 FAM177BA6PVY3 158 aa11□□□□□ -0.65
LSM1-202ENST00000520286 TLR3O15455 904 aaKnown RBP11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms