RNA–Protein interactions for RNA: ENST00000515785.1

LIMCH1-221, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best)

Gene LIMCH1, Length 1,129 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-221ENST00000515785 ELP3Q9H9T3 547 aa14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 CWC25Q9NXE8 425 aaPredicted RBP14.41□□□□□ -0.1
LIMCH1-221ENST00000515785 SSC5DA1L4H1 1573 aa14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 F8W031 263 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 IREB2P48200 963 aaKnown RBP14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 SUPT20HL1Q3ZLR7 823 aa14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 CCDC146Q8IYE0 955 aa14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 VEZTQ9HBM0 779 aa14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 BSDC1Q9NW68 430 aaPredicted RBP14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 SZT2Q5T011 3432 aa14.4□□□□□ -0.1
LIMCH1-221ENST00000515785 MMP14P50281 582 aa14.39□□□□□ -0.11
LIMCH1-221ENST00000515785 ARHGEF6Q15052 776 aa14.39□□□□□ -0.11
LIMCH1-221ENST00000515785 TAF1CQ15572 869 aaPredicted RBP14.39□□□□□ -0.11
LIMCH1-221ENST00000515785 GREM2Q9H772 168 aa14.39□□□□□ -0.11
LIMCH1-221ENST00000515785 TESPA1A2RU30 521 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 ELL2O00472 640 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 CTSWP56202 376 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 ANKRD13AQ8IZ07 590 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 TTLL11Q8NHH1 800 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 OPTNQ96CV9 577 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 PRMT6Q96LA8 375 aaPredicted RBP14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 ARHGAP39Q9C0H5 1083 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 ZFYVE28Q9HCC9 887 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 ZNF804BA4D1E1 1349 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 AOX1Q06278 1338 aa14.38□□□□□ -0.11
LIMCH1-221ENST00000515785 LAMB1P07942 1786 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 ZSWIM8A7E2V4 1837 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 HOXB7P09629 217 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 CFAP100Q494V2 611 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 CERS5Q8N5B7 392 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 BRI3BPQ8WY22 251 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 TRIM35Q9UPQ4 493 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 LEMD3Q9Y2U8 911 aa14.37□□□□□ -0.11
LIMCH1-221ENST00000515785 UNCXA6NJT0 531 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 MYO1BO43795 1136 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 KCNJ4P48050 445 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 RBM5P52756 815 aaKnown RBP eCLIP14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 RASA3Q14644 834 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 MS4A4AQ96JQ5 239 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 METTL22Q9BUU2 404 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 PPP2R3BQ9Y5P8 575 aa14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 COL1A1P02452 1464 aaPredicted RBP14.36□□□□□ -0.11
LIMCH1-221ENST00000515785 CCL15-CCL14A0A0B4J2E2 113 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 IGHMBP2P38935 993 aaKnown RBP14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 MTFR1Q15390 333 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 CCL15Q16663 113 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 CD209Q9NNX6 404 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 JAG2Q9Y219 1238 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 BRCA2P51587 3418 aa14.35□□□□□ -0.11
LIMCH1-221ENST00000515785 ECM29Q5VYK3 1845 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 SNAP23O00161 211 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 KIF22Q14807 665 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 FAM43AQ8N2R8 423 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 MTMR14Q8NCE2 650 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 ANKRD2Q9GZV1 360 aa14.34□□□□□ -0.11
LIMCH1-221ENST00000515785 OTOFQ9HC10 1997 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 SPDYE2BA6NHP3 402 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 SPDYE6P0CI01 402 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 SHISA4Q96DD7 197 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 MBIPQ9NS73 344 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 MAP3K2Q9Y2U5 619 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 MYH3P11055 1940 aa14.33□□□□□ -0.12
LIMCH1-221ENST00000515785 TAF5LO75529 589 aa14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 IGKV5-2P06315 115 aa14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 GTF2A2P52657 109 aa14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 CDAN1Q8IWY9 1227 aa14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 HELBQ8NG08 1087 aaPredicted RBP14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 MPHOSPH8Q99549 860 aa14.32□□□□□ -0.12
LIMCH1-221ENST00000515785 CUL9Q8IWT3 2517 aa14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 SOX1O00570 391 aaPredicted RBP14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 DDX58O95786 925 aaKnown RBP14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 MAP3K9P80192 1104 aa14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 LACTBP83111 547 aaPredicted RBP14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 LRCH3Q96II8 777 aa14.31□□□□□ -0.12
LIMCH1-221ENST00000515785 WDHD1O75717 1129 aaPredicted RBP14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 ITGA6P23229 1130 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 CHRNDQ07001 517 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 VGLL4Q14135 290 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 CWF19L2Q2TBE0 894 aaKnown RBP14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 UBE3BQ7Z3V4 1068 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 PRO3102Q9H379 93 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 TDRD3Q9H7E2 651 aaKnown RBP14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 ZNF70Q9UC06 446 aaPredicted RBP14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 NR2E3Q9Y5X4 410 aa14.3□□□□□ -0.12
LIMCH1-221ENST00000515785 TCP10L2B9ZVM9 353 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 ZBTB7BO15156 539 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 TLR2O60603 784 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 CCL5P13501 91 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 RUNDC1Q96C34 613 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 HTATIP2Q9BUP3 242 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 BIN2Q9UBW5 565 aaPredicted RBP14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 CSADQ9Y600 493 aa14.29□□□□□ -0.12
LIMCH1-221ENST00000515785 PI4KAP2A4QPH2 592 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 BTBD19C9JJ37 291 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 CTGFP29279 349 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 PI4KAP1Q8N8J0 262 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 C8orf58Q8NAV2 365 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 TMEM39BQ9GZU3 492 aa14.28□□□□□ -0.12
LIMCH1-221ENST00000515785 FOXD4L1Q9NU39 408 aa14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms