RNA–Protein interactions for RNA: ENST00000514190.5

LIMCH1-220, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-220ENST00000514190 LMNB1P20700 586 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 C8orf34Q49A92 452 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 PI16Q6UXB8 463 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 TICAM2Q86XR7 235 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 PSMD1Q99460 953 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 CD209Q9NNX6 404 aa15.78■□□□□ 0.12
LIMCH1-220ENST00000514190 LTBP1Q14766 1721 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 PDS5AQ29RF7 1337 aaKnown RBP15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 ZC3H4Q9UPT8 1303 aaKnown RBP15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 RIMBP2O15034 1052 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 CYP2E1P05181 493 aaPredicted RBP15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 TTF1Q15361 905 aaPredicted RBP15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 KBTBD3Q8NAB2 608 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 BACH2Q9BYV9 841 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 COA1Q9GZY4 146 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 ANTXR1Q9H6X2 564 aa15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 IQSEC3Q9UPP2 1182 aaPredicted RBP15.77■□□□□ 0.12
LIMCH1-220ENST00000514190 CCDC88AQ3V6T2 1871 aa15.77■□□□□ 0.11
LIMCH1-220ENST00000514190 DUOX1Q9NRD9 1551 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 FRAT2O75474 233 aaPredicted RBP15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 CHMLP26374 656 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 PRELPP51888 382 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 TBC1D9Q6ZT07 1266 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 FSD1Q9BTV5 496 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 VPS33BQ9H267 617 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 TIAM2Q8IVF5 1701 aa15.76■□□□□ 0.11
LIMCH1-220ENST00000514190 LTBP3Q9NS15 1303 aa15.75■□□□□ 0.11
LIMCH1-220ENST00000514190 KIAA2012Q0VF49 1180 aa15.75■□□□□ 0.11
LIMCH1-220ENST00000514190 PIH1D3Q9NQM4 214 aaKnown RBP15.75■□□□□ 0.11
LIMCH1-220ENST00000514190 HIP1O00291 1037 aa15.74■□□□□ 0.11
LIMCH1-220ENST00000514190 KIF3CO14782 793 aa15.74■□□□□ 0.11
LIMCH1-220ENST00000514190 CASC1Q6TDU7 716 aa15.74■□□□□ 0.11
LIMCH1-220ENST00000514190 TAOK3Q9H2K8 898 aa15.74■□□□□ 0.11
LIMCH1-220ENST00000514190 DICER1Q9UPY3 1922 aaKnown RBP15.74■□□□□ 0.11
LIMCH1-220ENST00000514190 G3V3G9 751 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 CHAF1AQ13111 956 aaPredicted RBP15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 DOK7Q18PE1 504 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 LRRFIP1Q32MZ4 808 aaKnown RBP15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 DCAF8Q5TAQ9 597 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 PODNQ7Z5L7 613 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 WDR66Q8TBY9 1149 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 RFX7Q2KHR2 1363 aa15.73■□□□□ 0.11
LIMCH1-220ENST00000514190 FAM205AQ6ZU69 1335 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 RNF113AO15541 343 aaKnown RBP15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 PPIP5K2O43314 1243 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 AOC3Q16853 763 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 NMRK2Q9NPI5 230 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 ZNF277Q9NRM2 450 aaPredicted RBP15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 DIAPH3Q9NSV4 1193 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 AKAP11Q9UKA4 1901 aa15.72■□□□□ 0.11
LIMCH1-220ENST00000514190 COL1A1P02452 1464 aaPredicted RBP15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 SALL1Q9NSC2 1324 aa15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 EIF5BO60841 1220 aaKnown RBP15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 IGSF3O75054 1194 aa15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 ZFYP08048 801 aaPredicted RBP15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 MAP3K12Q12852 859 aa15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 ZSCAN25Q6NSZ9 544 aa15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 DBNDD1Q9H9R9 158 aa15.71■□□□□ 0.11
LIMCH1-220ENST00000514190 IDH1O75874 414 aaKnown RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 IARSP41252 1262 aaKnown RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 NMIQ13287 307 aaPredicted RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 SPTY2D1Q68D10 685 aaPredicted RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 CWC27Q6UX04 472 aaKnown RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 LARGE2Q8N3Y3 721 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 ZGPATQ8N5A5 531 aaKnown RBP15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 RUFY2Q8WXA3 655 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 ESYT1Q9BSJ8 1104 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 LRP2BPQ9P2M1 347 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 ABCF2Q9UG63 623 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 JAG2Q9Y219 1238 aa15.7■□□□□ 0.1
LIMCH1-220ENST00000514190 ECE2O60344 883 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 SEC24BO95487 1268 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 ADD2P35612 726 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 GTF2IP78347 998 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 UBE3CQ15386 1083 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 ZMYM1Q5SVZ6 1142 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 SLC9C2Q5TAH2 1124 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 TTLL5Q6EMB2 1281 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 ERICH6Q7L0X2 663 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 TBC1D22AQ8WUA7 517 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 FAM227BQ96M60 508 aa15.69■□□□□ 0.1
LIMCH1-220ENST00000514190 GLTPD2A6NH11 291 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 SGSM2O43147 1006 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 CHGBP05060 677 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 PDE6AP16499 860 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 TMED8Q6PL24 325 aaPredicted RBP15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 KCNQ5Q9NR82 932 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 HELLSQ9NRZ9 838 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 RAI14Q9P0K7 980 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 CEP350Q5VT06 3117 aa15.68■□□□□ 0.1
LIMCH1-220ENST00000514190 A0A0D9SFI3 127 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 TCRBV5S4A2TA0A5A2 114 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 TOMM70O94826 608 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 FKBP1AP62942 108 aaKnown RBP15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 SLFNL1Q499Z3 407 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 MCMDC2Q4G0Z9 681 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 STRIP1Q5VSL9 837 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 MAGEB6Q8N7X4 407 aa15.67■□□□□ 0.1
LIMCH1-220ENST00000514190 APPBP2Q92624 585 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms