RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 ARHGAP6O43182 974 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 ZSCAN20P17040 1043 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-211ENST00000513346 KSR2Q6VAB6 950 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 B4GALNT4Q76KP1 1039 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 SBNO2Q9Y2G9 1366 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 EFCAB8A8MWE9 144 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 ZNF213O14771 459 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 FANCCQ00597 558 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 BRD3Q15059 726 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 ENOX2Q16206 610 aaKnown RBP12.8□□□□□ -0.36
TCOF1-211ENST00000513346 CCDC121Q6ZUS5 278 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 PHAXQ9H814 394 aaKnown RBP12.8□□□□□ -0.36
TCOF1-211ENST00000513346 UGGT1Q9NYU2 1555 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 MPHOSPH10O00566 681 aaKnown RBP12.8□□□□□ -0.36
TCOF1-211ENST00000513346 POLD1P28340 1107 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 CUL4AQ13619 759 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 IP6K1Q92551 441 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 ZNF219Q9P2Y4 722 aaPredicted RBP12.8□□□□□ -0.36
TCOF1-211ENST00000513346 MAP3K5Q99683 1374 aa12.8□□□□□ -0.36
TCOF1-211ENST00000513346 GRM8O00222 908 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 HNRNPH2P55795 449 aaKnown RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 AOX1Q06278 1338 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 SOS1Q07889 1333 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 NMIQ13287 307 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 NFATC2IPQ8NCF5 419 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 NRBP1Q9UHY1 535 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 ZCCHC11Q5TAX3 1644 aaKnown RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 A0A1B0GVL5 298 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 SPECC1Q5M775 1068 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 SPTLC3Q9NUV7 552 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 A0A1B0GUA9 196 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 RANBP6O60518 1105 aaKnown RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 IQCA1Q86XH1 822 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 CNKSR2Q8WXI2 1034 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 CCDC114Q96M63 670 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 PLA2R1Q13018 1463 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 CCDC196A0A1B0GTZ2 297 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 MARCKSP29966 332 aaPredicted RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 SPAG1Q07617 926 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 CERS3Q8IU89 383 aa12.79□□□□□ -0.36
TCOF1-211ENST00000513346 PA2G4Q9UQ80 394 aaKnown RBP12.79□□□□□ -0.36
TCOF1-211ENST00000513346 ALDH1L1O75891 902 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 CYLC1P35663 651 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 IARSP41252 1262 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 NBPF6Q5VWK0 638 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 NBPF5PQ86XG9 351 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 TDRD7Q8NHU6 1098 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 NBPF4Q96M43 638 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 ZEB2O60315 1214 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 ATP2C2O75185 946 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 SSBP05455 408 aaKnown RBP eCLIP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 ATP6V1AP38606 617 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 CWF19L2Q2TBE0 894 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 SPECC1LQ69YQ0 1117 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 CDC37L1Q7L3B6 337 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 CACTINQ8WUQ7 758 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 PALD1Q9ULE6 856 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 MTMR6Q9Y217 621 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 SSH2Q76I76 1423 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 TMEM94Q12767 1356 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 KIF24Q5T7B8 1368 aa12.78□□□□□ -0.36
TCOF1-211ENST00000513346 SSRP1Q08945 709 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 RNF41Q9H4P4 317 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 RRP15Q9Y3B9 282 aaKnown RBP12.78□□□□□ -0.36
TCOF1-211ENST00000513346 PTPDC1A2A3K4 754 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 A6NNZ2 444 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 CHL1O00533 1208 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 TUBB8Q3ZCM7 444 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 ZNF444Q8N0Y2 327 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-211ENST00000513346 LINS1Q8NG48 757 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 USP21Q9UK80 565 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 MRVI1Q9Y6F6 885 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 RGS12O14924 1447 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 PSDA5PKW4 1024 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-211ENST00000513346 AKR1B15C9JRZ8 316 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-211ENST00000513346 TTF1Q15361 905 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-211ENST00000513346 SLF2Q8IX21 1173 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 PLEKHG1Q9ULL1 1385 aa12.77□□□□□ -0.36
TCOF1-211ENST00000513346 ABCC4O15439 1325 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 CDC25BP30305 580 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC82Q8N4S0 544 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 XPO4Q9C0E2 1151 aaKnown RBP12.77□□□□□ -0.37
TCOF1-211ENST00000513346 BMP2KQ9NSY1 1161 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-211ENST00000513346 DNA2P51530 1060 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 CACNA2D4Q7Z3S7 1137 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 ARFGAP2Q8N6H7 521 aa12.77□□□□□ -0.37
TCOF1-211ENST00000513346 GOLGA8AA7E2F4 631 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 NDUFAB1O14561 156 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 ZNF76P36508 570 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 ZFYVE27Q5T4F4 411 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC113Q9H0I3 377 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 ERVK-7P63135 1459 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 KDM5DQ9BY66 1539 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 KLF18A0A0U1RQI7 1052 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 KRT86O43790 486 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 RPS6KB1P23443 525 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 CCDC152Q4G0S7 254 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 MSL1Q68DK7 614 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 FBXO38Q6PIJ6 1188 aa12.76□□□□□ -0.37
TCOF1-211ENST00000513346 LMBR1LQ6UX01 489 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms