RNA–Protein interactions for RNA: ENST00000512813.5

CLCN3-208, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 4

Gene CLCN3, Length 563 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-208ENST00000512813 SH3TC1Q8TE82 1336 aa12.56□□□□□ -0.4
CLCN3-208ENST00000512813 MYO3BQ8WXR4 1341 aa12.56□□□□□ -0.4
CLCN3-208ENST00000512813 TFRCP02786 760 aaKnown RBP12.55□□□□□ -0.4
CLCN3-208ENST00000512813 NLRP10Q86W26 655 aa12.55□□□□□ -0.4
CLCN3-208ENST00000512813 SLAIN1Q8ND83 568 aa12.55□□□□□ -0.4
CLCN3-208ENST00000512813 CRISPLD2Q9H0B8 497 aa12.55□□□□□ -0.4
CLCN3-208ENST00000512813 ADGRA2Q96PE1 1338 aa12.55□□□□□ -0.4
CLCN3-208ENST00000512813 PSMC4P43686 418 aa12.54□□□□□ -0.4
CLCN3-208ENST00000512813 DACT2Q5SW24 774 aa12.54□□□□□ -0.4
CLCN3-208ENST00000512813 DIS3LQ8TF46 1054 aaKnown RBP12.54□□□□□ -0.4
CLCN3-208ENST00000512813 ELP3Q9H9T3 547 aa12.54□□□□□ -0.4
CLCN3-208ENST00000512813 TRMT112Q9UI30 125 aaKnown RBP12.54□□□□□ -0.4
CLCN3-208ENST00000512813 GGA1Q9UJY5 639 aa12.54□□□□□ -0.4
CLCN3-208ENST00000512813 HCN4Q9Y3Q4 1203 aa12.54□□□□□ -0.4
CLCN3-208ENST00000512813 ECM29Q5VYK3 1845 aa12.53□□□□□ -0.4
CLCN3-208ENST00000512813 USP2O75604 605 aaPredicted RBP12.53□□□□□ -0.4
CLCN3-208ENST00000512813 SF3B3Q15393 1217 aaKnown RBP12.53□□□□□ -0.4
CLCN3-208ENST00000512813 SUPT20HL1Q3ZLR7 823 aa12.53□□□□□ -0.4
CLCN3-208ENST00000512813 MYLIPQ8WY64 445 aa12.53□□□□□ -0.4
CLCN3-208ENST00000512813 DEFB118Q96PH6 123 aa12.53□□□□□ -0.4
CLCN3-208ENST00000512813 PAK6Q9NQU5 681 aaPredicted RBP12.53□□□□□ -0.4
CLCN3-208ENST00000512813 FOSL2P15408 326 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 C17orf99Q6UX52 265 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 ANKLE1Q8NAG6 615 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 MXD3Q9BW11 206 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 C1QTNF1Q9BXJ1 281 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 SEMA6BQ9H3T3 888 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 PANK3Q9H999 370 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 ANKIB1Q9P2G1 1089 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 ZNF804BA4D1E1 1349 aa12.52□□□□□ -0.41
CLCN3-208ENST00000512813 COL3A1P02461 1466 aaPredicted RBP12.52□□□□□ -0.41
CLCN3-208ENST00000512813 FMNL1O95466 1100 aaPredicted RBP12.51□□□□□ -0.41
CLCN3-208ENST00000512813 RPS8P62241 208 aaKnown RBP12.51□□□□□ -0.41
CLCN3-208ENST00000512813 PRKCZQ05513 592 aa12.51□□□□□ -0.41
CLCN3-208ENST00000512813 HSP90AB3PQ58FF7 597 aa12.51□□□□□ -0.41
CLCN3-208ENST00000512813 NBPF12Q5TAG4 269 aaPredicted RBP12.5□□□□□ -0.41
CLCN3-208ENST00000512813 STRIP1Q5VSL9 837 aa12.5□□□□□ -0.41
CLCN3-208ENST00000512813 MCM10Q7L590 875 aa12.5□□□□□ -0.41
CLCN3-208ENST00000512813 LRP10Q7Z4F1 713 aa12.5□□□□□ -0.41
CLCN3-208ENST00000512813 DDX60LQ5H9U9 1706 aaKnown RBP12.5□□□□□ -0.41
CLCN3-208ENST00000512813 INHAP05111 366 aa12.49□□□□□ -0.41
CLCN3-208ENST00000512813 ALYREFQ86V81 257 aaKnown RBP12.49□□□□□ -0.41
CLCN3-208ENST00000512813 PHACTR3Q96KR7 559 aa12.49□□□□□ -0.41
CLCN3-208ENST00000512813 XDHP47989 1333 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 BTBD19C9JJ37 291 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 CETPP11597 493 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.48□□□□□ -0.41
CLCN3-208ENST00000512813 USP38Q8NB14 1042 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 ADAMTS19Q8TE59 1207 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 RTF1Q92541 710 aaKnown RBP12.48□□□□□ -0.41
CLCN3-208ENST00000512813 NBPF3Q9H094 633 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 CPA4Q9UI42 421 aa12.48□□□□□ -0.41
CLCN3-208ENST00000512813 MED23Q9ULK4 1368 aa12.47□□□□□ -0.41
CLCN3-208ENST00000512813 MGAMO43451 1857 aa12.47□□□□□ -0.41
CLCN3-208ENST00000512813 ADCY3O60266 1144 aa12.47□□□□□ -0.41
CLCN3-208ENST00000512813 MDM2Q00987 491 aaPredicted RBP12.47□□□□□ -0.41
CLCN3-208ENST00000512813 TAF7Q15545 349 aaPredicted RBP12.47□□□□□ -0.41
CLCN3-208ENST00000512813 KIAA0825Q8IV33 1275 aa12.47□□□□□ -0.41
CLCN3-208ENST00000512813 POLR3GLQ9BT43 218 aa12.47□□□□□ -0.41
CLCN3-208ENST00000512813 TTYH1Q9H313 450 aaPredicted RBP12.47□□□□□ -0.41
CLCN3-208ENST00000512813 U2SURPO15042 1029 aaKnown RBP12.46□□□□□ -0.41
CLCN3-208ENST00000512813 MAPK8IP2Q13387 824 aaPredicted RBP12.46□□□□□ -0.41
CLCN3-208ENST00000512813 VGLL4Q14135 290 aa12.46□□□□□ -0.41
CLCN3-208ENST00000512813 MTMR14Q8NCE2 650 aa12.46□□□□□ -0.41
CLCN3-208ENST00000512813 PXYLP1Q8TE99 480 aa12.46□□□□□ -0.41
CLCN3-208ENST00000512813 ATXN2LQ8WWM7 1075 aaKnown RBP12.46□□□□□ -0.41
CLCN3-208ENST00000512813 UHRF1Q96T88 793 aaPredicted RBP12.46□□□□□ -0.41
CLCN3-208ENST00000512813 P2RX7Q99572 595 aaKnown RBP12.46□□□□□ -0.41
CLCN3-208ENST00000512813 SPDYE5A6NIY4 337 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 ELNP15502 786 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 FCGRTP55899 365 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 EIF4A1P60842 406 aaKnown RBP12.45□□□□□ -0.42
CLCN3-208ENST00000512813 DLGAP5Q15398 846 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 FBXW7Q969H0 707 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 THUMPD2Q9BTF0 503 aaKnown RBP12.45□□□□□ -0.42
CLCN3-208ENST00000512813 C11orf49Q9H6J7 331 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 MIS18AQ9NYP9 233 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 GABRQQ9UN88 632 aa12.45□□□□□ -0.42
CLCN3-208ENST00000512813 ATP2B4P23634 1241 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 PRKAR2BP31323 418 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 DCTN1Q14203 1278 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 PDIA6Q15084 440 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 LRFN3Q9BTN0 628 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.44□□□□□ -0.42
CLCN3-208ENST00000512813 CSADQ9Y600 493 aa12.44□□□□□ -0.42
CLCN3-208ENST00000512813 HTATSF1O43719 755 aaKnown RBP12.43□□□□□ -0.42
CLCN3-208ENST00000512813 MAP3K9P80192 1104 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 SNAPC2Q13487 334 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 IRF5Q13568 498 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 RASA3Q14644 834 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLCN3-208ENST00000512813 ASB2Q96Q27 587 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 RSPH6AQ9H0K4 717 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 KNSTRNQ9Y448 316 aa12.43□□□□□ -0.42
CLCN3-208ENST00000512813 PFASO15067 1338 aa12.42□□□□□ -0.42
CLCN3-208ENST00000512813 CLRN2A0PK11 232 aa12.42□□□□□ -0.42
CLCN3-208ENST00000512813 MYO1BO43795 1136 aa12.42□□□□□ -0.42
CLCN3-208ENST00000512813 FLT3LGP49771 235 aa12.42□□□□□ -0.42
CLCN3-208ENST00000512813 PNISRQ8TF01 805 aaKnown RBP12.42□□□□□ -0.42
CLCN3-208ENST00000512813 FAM89AQ96GI7 184 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms