RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CFAP45Q9UL16 551 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 PTPRTO14522 1441 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 ARHGEF40Q8TER5 1519 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 CEP152O94986 1710 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 KNDC1Q76NI1 1749 aa13.77□□□□□ -0.21
LIMCH1-213ENST00000511496 PRPF6O94906 941 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 CHGAP10645 457 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 GGCXP38435 758 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 CCT2P78371 535 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 G3BP2Q9UN86 482 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 ADGRL1O94910 1474 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 TRAPPC8Q9Y2L5 1435 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 TMEM232C9JQI7 657 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 RAB11FIP3O75154 756 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 DCTN1Q14203 1278 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 MSANTD4Q8NCY6 345 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 CRACR2AQ9BSW2 395 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 F6X3S4 739 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 ADKP55263 362 aaKnown RBP13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 SIL1Q9H173 461 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 CDC23Q9UJX2 597 aa13.76□□□□□ -0.21
LIMCH1-213ENST00000511496 JAK2O60674 1132 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 MTX1Q13505 466 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 COL9A3Q14050 684 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 KCNB1Q14721 858 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 CCDC40Q4G0X9 1142 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 SPDYE1Q8NFV5 336 aaPredicted RBP13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 IL17RAQ96F46 866 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 FANCLQ9NW38 375 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 SYNJ2O15056 1496 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 PLEKHD1A6NEE1 506 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 GOLGA6L9A6NEM1 432 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 SNUPNO95149 360 aaKnown RBP13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 AMOTL1Q8IY63 956 aa13.75□□□□□ -0.21
LIMCH1-213ENST00000511496 A0A1B0GVL5 298 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 CTAGE15A4D2H0 777 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 ZMYND10O75800 440 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 CTAGE8P0CG41 777 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 EIF2S2P20042 333 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 PTH1RQ03431 593 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 TRAF1Q13077 416 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 STIM1Q13586 685 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 ZNF569Q5MCW4 686 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 CTAGE6Q86UF2 777 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 CTAGE4Q8IX94 777 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 BRF1Q92994 677 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 SAAL1Q96ER3 474 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 HINFPQ9BQA5 517 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 POLD4Q9HCU8 107 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 FAM83GA6ND36 823 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 TMCO5BA8MYB1 307 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 ZEB2O60315 1214 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 PPFIA3O75145 1194 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 WLSQ5T9L3 541 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 NOA1Q8NC60 698 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 FAM210AQ96ND0 272 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 ADGRB2O60241 1585 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 IQGAP1P46940 1657 aa13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 MEFVO15553 781 aaPredicted RBP13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 MSL3Q8N5Y2 521 aaKnown RBP13.74□□□□□ -0.21
LIMCH1-213ENST00000511496 FBLN1P23142 703 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 MTF1Q14872 753 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 THEMIS2Q5TEJ8 643 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 MRPL44Q9H9J2 332 aaKnown RBP13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 CROCC2H7BZ55 1655 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 PDS5BQ9NTI5 1447 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 RPS6KA3P51812 740 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 FAM160A1Q05DH4 1040 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 SNCBQ16143 134 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 B4GALNT4Q76KP1 1039 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 A0A0U1RQJ8 604 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 EIF3HO15372 352 aaKnown RBP eCLIP13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 FSBPO95073 299 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 ZKSCAN1P17029 563 aaPredicted RBP13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 CCDC181Q5TID7 509 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 ATRIPQ8WXE1 791 aa13.73□□□□□ -0.21
LIMCH1-213ENST00000511496 ADCY9O60503 1353 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 SALL3Q9BXA9 1300 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 RPUSD2Q8IZ73 545 aaKnown RBP13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 ZSWIM6Q9HCJ5 1215 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 PNMA6EA0A0J9YXQ4 647 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 KIF5CO60282 957 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 CDC25CP30307 473 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 PPFIA1Q13136 1202 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 SF3B2Q13435 895 aaKnown RBP13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 FCHSD1Q86WN1 690 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 GSPT2Q8IYD1 628 aaKnown RBP13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 CCDC114Q96M63 670 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 SLC40A1Q9NP59 571 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 HPCAL4Q9UM19 191 aa13.72□□□□□ -0.21
LIMCH1-213ENST00000511496 FANCD2Q9BXW9 1451 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 SHOX2O60902 331 aaPredicted RBP13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 NFXL1Q6ZNB6 911 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 ARHGAP25P42331 645 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 PDCLQ13371 301 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 SAFB2Q14151 953 aaKnown RBP eCLIP13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 NFE2L2Q16236 605 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 MYSM1Q5VVJ2 828 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 TRIM74Q86UV6 250 aa13.71□□□□□ -0.21
LIMCH1-213ENST00000511496 TRIM73Q86UV7 250 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms