RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 PPP1R18Q6NYC8 613 aa11.53□□□□□ -0.56
USP53-207ENST00000510852 KRT77Q7Z794 578 aa11.53□□□□□ -0.56
USP53-207ENST00000510852 RGS20O76081 388 aa11.52□□□□□ -0.56
USP53-207ENST00000510852 SLC39A6Q13433 755 aa11.52□□□□□ -0.56
USP53-207ENST00000510852 E2F5Q15329 346 aa11.52□□□□□ -0.56
USP53-207ENST00000510852 SUGP1Q8IWZ8 645 aaKnown RBP11.52□□□□□ -0.56
USP53-207ENST00000510852 TMOD3Q9NYL9 352 aa11.52□□□□□ -0.56
USP53-207ENST00000510852 SUPT16HQ9Y5B9 1047 aaKnown RBP11.52□□□□□ -0.56
USP53-207ENST00000510852 VIRMAQ69YN4 1812 aaKnown RBP11.52□□□□□ -0.56
USP53-207ENST00000510852 VAMP4O75379 141 aa11.52□□□□□ -0.57
USP53-207ENST00000510852 RXRBP28702 533 aa11.52□□□□□ -0.57
USP53-207ENST00000510852 LMOD1P29536 600 aaPredicted RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 EIF4A1P60842 406 aaKnown RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 TWISTNBQ3B726 338 aaPredicted RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 ZNF790Q6PG37 636 aa11.52□□□□□ -0.57
USP53-207ENST00000510852 POTEAQ6S8J7 498 aa11.52□□□□□ -0.57
USP53-207ENST00000510852 WDR75Q8IWA0 830 aaKnown RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 PAIP2Q9BPZ3 127 aaKnown RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 POLR3EQ9NVU0 708 aa11.52□□□□□ -0.57
USP53-207ENST00000510852 SIPA1L3O60292 1781 aaPredicted RBP11.52□□□□□ -0.57
USP53-207ENST00000510852 TOGARAM1Q9Y4F4 1720 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 DNAJC6O75061 913 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 RNASEH2AO75792 299 aaKnown RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 SERPINB4P48594 390 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 PRIM1P49642 420 aaKnown RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 CLK1P49759 484 aaKnown RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 CBLBQ13191 982 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 PIGBQ92521 554 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 COQ9O75208 318 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 HMGN5P82970 282 aaKnown RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 FAM160A1Q05DH4 1040 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 ARMC3Q5W041 872 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 CHCHD4Q8N4Q1 142 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 SYTL4Q96C24 671 aaPredicted RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 ACSBG1Q96GR2 724 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 RBM28Q9NW13 759 aaKnown RBP11.51□□□□□ -0.57
USP53-207ENST00000510852 GJA3Q9Y6H8 435 aa11.51□□□□□ -0.57
USP53-207ENST00000510852 TNFRSF10BO14763 440 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 RBP3P10745 1247 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 RARSP54136 660 aaKnown RBP11.5□□□□□ -0.57
USP53-207ENST00000510852 FAM182BQ5T319 152 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 CHPFQ8IZ52 775 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 KIAA1958Q8N8K9 716 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 CEP89Q96ST8 783 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 C22orf23Q9BZE7 217 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 KCNA2P16389 499 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 NAP1L1P55209 391 aaKnown RBP11.5□□□□□ -0.57
USP53-207ENST00000510852 RBL2Q08999 1139 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 TTC5Q8N0Z6 440 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 SGIP1Q9BQI5 828 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 CAPN10Q9HC96 672 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 KDM3BQ7LBC6 1761 aa11.5□□□□□ -0.57
USP53-207ENST00000510852 PALM3A6NDB9 673 aaPredicted RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 BCAR3O75815 825 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 DNAJA1P31689 397 aaKnown RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 TNNI2P48788 182 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 METTL16Q86W50 562 aaKnown RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 BCL9O00512 1426 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 SCAMP3O14828 347 aaKnown RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 CD151P48509 253 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 IFT88Q13099 833 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 GSE1Q14687 1217 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 CCSAPQ6IQ19 270 aaPredicted RBP11.49□□□□□ -0.57
USP53-207ENST00000510852 KRT27Q7Z3Y8 459 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 OSBPL2Q9H1P3 480 aa11.49□□□□□ -0.57
USP53-207ENST00000510852 IPO5O00410 1097 aaKnown RBP11.48□□□□□ -0.57
USP53-207ENST00000510852 NPHP1O15259 732 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 KCNQ2O43526 872 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 CASQ1P31415 396 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 WASHC5Q12768 1159 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 CCDC89Q8N998 374 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 PPM1EQ8WY54 764 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 SSH1Q8WYL5 1049 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 ZNF496Q96IT1 587 aaPredicted RBP11.48□□□□□ -0.57
USP53-207ENST00000510852 APBA2Q99767 749 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.48□□□□□ -0.57
USP53-207ENST00000510852 INTUQ9ULD6 942 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 ASAP1Q9ULH1 1129 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 HEG1Q9ULI3 1381 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 MFSD4BQ5TF39 518 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 ANKRD13BQ86YJ7 626 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 ERP27Q96DN0 273 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 FMNL2Q96PY5 1086 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 ATG3Q9NT62 314 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 DOT1LQ8TEK3 1739 aa11.48□□□□□ -0.57
USP53-207ENST00000510852 SOS1Q07889 1333 aaPredicted RBP11.47□□□□□ -0.57
USP53-207ENST00000510852 RNF123Q5XPI4 1314 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 ERICH4A6NGS2 130 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 EIF5P55010 431 aaKnown RBP11.47□□□□□ -0.57
USP53-207ENST00000510852 RELL1Q8IUW5 271 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 LMNTD2Q8IXW0 634 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 SMC4Q9NTJ3 1288 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 HDAC9Q9UKV0 1011 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 TMEM238LA0A1B0GVL6 79 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 PRSS47A8MTI9 375 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 HOXB7P09629 217 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 RRP1P56182 461 aaKnown RBP11.47□□□□□ -0.57
USP53-207ENST00000510852 FAM210AQ96ND0 272 aa11.47□□□□□ -0.57
USP53-207ENST00000510852 RGS12O14924 1447 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms