RNA–Protein interactions for RNA: ENST00000497984.5

SMC4-227, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 563 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-227ENST00000497984 DBNDD2Q9BQY9 259 aa8.38□□□□□ -1.07
SMC4-227ENST00000497984 RUSC1Q9BVN2 902 aa8.38□□□□□ -1.07
SMC4-227ENST00000497984 SOX1O00570 391 aaPredicted RBP8.37□□□□□ -1.07
SMC4-227ENST00000497984 TNFRSF21O75509 655 aa8.37□□□□□ -1.07
SMC4-227ENST00000497984 BMP3P12645 472 aa8.37□□□□□ -1.07
SMC4-227ENST00000497984 SPINK2P20155 84 aa8.37□□□□□ -1.07
SMC4-227ENST00000497984 C19orf57Q0VDD7 668 aa8.37□□□□□ -1.07
SMC4-227ENST00000497984 MEGF11A6BM72 1044 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 ADAMTS4O75173 837 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 BEND4Q6ZU67 534 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 TTC16Q8NEE8 873 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 BSNDQ8WZ55 320 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 FOXD3Q9UJU5 478 aaPredicted RBP8.36□□□□□ -1.07
SMC4-227ENST00000497984 HIF3AQ9Y2N7 669 aa8.36□□□□□ -1.07
SMC4-227ENST00000497984 COL17A1Q9UMD9 1497 aaPredicted RBP8.36□□□□□ -1.07
SMC4-227ENST00000497984 SART1O43290 800 aaKnown RBP8.35□□□□□ -1.07
SMC4-227ENST00000497984 FZD6O60353 706 aa8.35□□□□□ -1.07
SMC4-227ENST00000497984 PHACTR2O75167 634 aa8.35□□□□□ -1.07
SMC4-227ENST00000497984 PHLDB3Q6NSJ2 640 aa8.35□□□□□ -1.07
SMC4-227ENST00000497984 CCDC82Q8N4S0 544 aa8.35□□□□□ -1.07
SMC4-227ENST00000497984 SNX29Q8TEQ0 813 aa8.35□□□□□ -1.07
SMC4-227ENST00000497984 OAS3Q9Y6K5 1087 aaKnown RBP8.35□□□□□ -1.07
SMC4-227ENST00000497984 EDN3P14138 238 aa8.34□□□□□ -1.07
SMC4-227ENST00000497984 ARL4DP49703 201 aa8.34□□□□□ -1.07
SMC4-227ENST00000497984 PEAR1Q5VY43 1037 aaPredicted RBP8.34□□□□□ -1.07
SMC4-227ENST00000497984 FDX2Q6P4F2 183 aa8.34□□□□□ -1.07
SMC4-227ENST00000497984 INTS5Q6P9B9 1019 aaKnown RBP8.34□□□□□ -1.07
SMC4-227ENST00000497984 SHKBP1Q8TBC3 707 aa8.34□□□□□ -1.07
SMC4-227ENST00000497984 TMPRSS13Q9BYE2 586 aa8.34□□□□□ -1.07
SMC4-227ENST00000497984 BHLHE41Q9C0J9 482 aaPredicted RBP8.34□□□□□ -1.07
SMC4-227ENST00000497984 PPP1R15AO75807 674 aaPredicted RBP8.33□□□□□ -1.08
SMC4-227ENST00000497984 GP2P55259 537 aaKnown RBP8.33□□□□□ -1.08
SMC4-227ENST00000497984 IKBKEQ14164 716 aa8.33□□□□□ -1.08
SMC4-227ENST00000497984 DTX1Q86Y01 620 aa8.33□□□□□ -1.08
SMC4-227ENST00000497984 KCNF1Q9H3M0 494 aa8.33□□□□□ -1.08
SMC4-227ENST00000497984 SOX17Q9H6I2 414 aaPredicted RBP8.33□□□□□ -1.08
SMC4-227ENST00000497984 LATS2Q9NRM7 1088 aa8.33□□□□□ -1.08
SMC4-227ENST00000497984 LOC100289279A0A1B0GTE1 492 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 FAM13AO94988 1023 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 DLGAP3O95886 979 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 GRIK1P39086 918 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 USP5P45974 858 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 EHHADHQ08426 723 aa8.32□□□□□ -1.08
SMC4-227ENST00000497984 CARNS1A5YM72 827 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 TIAF1O95411 115 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 ESRRAP11474 423 aaPredicted RBP8.31□□□□□ -1.08
SMC4-227ENST00000497984 MAP4P27816 1152 aaKnown RBP8.31□□□□□ -1.08
SMC4-227ENST00000497984 SGO2Q562F6 1265 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 GJD3Q8N144 294 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 SMG8Q8ND04 991 aaKnown RBP8.31□□□□□ -1.08
SMC4-227ENST00000497984 KRTAP4-9Q9BYQ8 210 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 SUGCTQ9HAC7 445 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 CCDC87Q9NVE4 849 aa8.31□□□□□ -1.08
SMC4-227ENST00000497984 GAS2O43903 313 aaKnown RBP8.3□□□□□ -1.08
SMC4-227ENST00000497984 FKBP4Q02790 459 aaKnown RBP eCLIP8.3□□□□□ -1.08
SMC4-227ENST00000497984 SF3B2Q13435 895 aaKnown RBP8.3□□□□□ -1.08
SMC4-227ENST00000497984 AAMPQ13685 434 aa8.3□□□□□ -1.08
SMC4-227ENST00000497984 ASAP3Q8TDY4 903 aa8.3□□□□□ -1.08
SMC4-227ENST00000497984 USP26Q9BXU7 913 aa8.3□□□□□ -1.08
SMC4-227ENST00000497984 C1orf115Q9H7X2 142 aa8.3□□□□□ -1.08
SMC4-227ENST00000497984 AMOTL2Q9Y2J4 779 aa8.3□□□□□ -1.08
SMC4-227ENST00000497984 IRAK1P51617 712 aa8.29□□□□□ -1.08
SMC4-227ENST00000497984 NUTM2GQ5VZR2 741 aa8.29□□□□□ -1.08
SMC4-227ENST00000497984 MFSD14AQ96MC6 490 aa8.29□□□□□ -1.08
SMC4-227ENST00000497984 ZFYVE28Q9HCC9 887 aa8.29□□□□□ -1.08
SMC4-227ENST00000497984 METTL12A8MUP2 240 aa8.28□□□□□ -1.08
SMC4-227ENST00000497984 WDR64B1ANS9 1081 aa8.28□□□□□ -1.08
SMC4-227ENST00000497984 C12orf50Q8NA57 414 aaPredicted RBP8.28□□□□□ -1.08
SMC4-227ENST00000497984 NRSN2Q9GZP1 204 aa8.28□□□□□ -1.08
SMC4-227ENST00000497984 MTMR7Q9Y216 660 aa8.28□□□□□ -1.08
SMC4-227ENST00000497984 HOXA10P31260 410 aaPredicted RBP8.27□□□□□ -1.09
SMC4-227ENST00000497984 ZNF211Q13398 564 aaPredicted RBP8.27□□□□□ -1.09
SMC4-227ENST00000497984 KRTAP4-2Q9BYR5 136 aa8.27□□□□□ -1.09
SMC4-227ENST00000497984 CYP4F12Q9HCS2 524 aa8.27□□□□□ -1.09
SMC4-227ENST00000497984 ANO2Q9NQ90 1003 aa8.27□□□□□ -1.09
SMC4-227ENST00000497984 F13BP05160 661 aa8.26□□□□□ -1.09
SMC4-227ENST00000497984 POLR3DP05423 398 aaPredicted RBP8.26□□□□□ -1.09
SMC4-227ENST00000497984 TAL1P17542 331 aaPredicted RBP8.26□□□□□ -1.09
SMC4-227ENST00000497984 EXOSC6Q5RKV6 272 aaKnown RBP8.26□□□□□ -1.09
SMC4-227ENST00000497984 SHISA5Q8N114 240 aa8.26□□□□□ -1.09
SMC4-227ENST00000497984 FMNL2Q96PY5 1086 aa8.26□□□□□ -1.09
SMC4-227ENST00000497984 PIM2Q9P1W9 311 aa8.26□□□□□ -1.09
SMC4-227ENST00000497984 ABL1P00519 1130 aa8.25□□□□□ -1.09
SMC4-227ENST00000497984 DRD2P14416 443 aa8.25□□□□□ -1.09
SMC4-227ENST00000497984 GSTM4Q03013 218 aa8.25□□□□□ -1.09
SMC4-227ENST00000497984 CDPF1Q6NVV7 123 aa8.25□□□□□ -1.09
SMC4-227ENST00000497984 CCNJLQ8IV13 435 aa8.25□□□□□ -1.09
SMC4-227ENST00000497984 C2CD4AQ8NCU7 369 aaPredicted RBP8.25□□□□□ -1.09
SMC4-227ENST00000497984 A0A1W2PP55 124 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 PAX4O43316 350 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 WNT11O96014 354 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 RXRBP28702 533 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 GALNT12Q8IXK2 581 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 TCF12Q99081 682 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 GTF3C3Q9Y5Q9 886 aa8.24□□□□□ -1.09
SMC4-227ENST00000497984 A0A096LPE4 126 aa8.23□□□□□ -1.09
SMC4-227ENST00000497984 FAM95CA0A1B0GW59 222 aa8.23□□□□□ -1.09
SMC4-227ENST00000497984 A0A1W2PPZ6 126 aa8.23□□□□□ -1.09
SMC4-227ENST00000497984 GRIA4P48058 902 aa8.23□□□□□ -1.09
SMC4-227ENST00000497984 ECM1Q16610 540 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms