RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 SMARCC2Q8TAQ2 1214 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 DHX37Q8IY37 1157 aaKnown RBP21.74■■□□□ 1.07
COL27A1-207ENST00000494090 COMMD10Q9Y6G5 202 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 PABPN1LA6NDY0 278 aaKnown RBP21.74■■□□□ 1.07
COL27A1-207ENST00000494090 NAPAP54920 295 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 KIAA0753Q2KHM9 967 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 HEATR3Q7Z4Q2 680 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 NFATC2IPQ8NCF5 419 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 GIMAP7Q8NHV1 300 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 YTHDC2Q9H6S0 1430 aaKnown RBP21.74■■□□□ 1.07
COL27A1-207ENST00000494090 TRPM2O94759 1503 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 HSF2BPO75031 334 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 SLC4A8Q2Y0W8 1093 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 DHX58Q96C10 678 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 HELLSQ9NRZ9 838 aa21.74■■□□□ 1.07
COL27A1-207ENST00000494090 ADAMTS12P58397 1594 aa21.73■■□□□ 1.07
COL27A1-207ENST00000494090 EYA3Q99504 573 aa21.73■■□□□ 1.07
COL27A1-207ENST00000494090 HOMER2Q9NSB8 354 aa21.73■■□□□ 1.07
COL27A1-207ENST00000494090 BICC1Q9H694 974 aaKnown RBP21.73■■□□□ 1.07
COL27A1-207ENST00000494090 RNF123Q5XPI4 1314 aa21.73■■□□□ 1.07
COL27A1-207ENST00000494090 PTGS1P23219 599 aa21.73■■□□□ 1.07
COL27A1-207ENST00000494090 DZIP3Q86Y13 1208 aaKnown RBP21.73■■□□□ 1.07
COL27A1-207ENST00000494090 HOXC9P31274 260 aa21.72■■□□□ 1.07
COL27A1-207ENST00000494090 TUBB4BP68371 445 aa21.72■■□□□ 1.07
COL27A1-207ENST00000494090 ZC3H12CQ9C0D7 883 aaKnown RBP21.72■■□□□ 1.07
COL27A1-207ENST00000494090 RNMTO43148 476 aaKnown RBP21.72■■□□□ 1.07
COL27A1-207ENST00000494090 SPECC1LQ69YQ0 1117 aa21.72■■□□□ 1.07
COL27A1-207ENST00000494090 DCAF5Q96JK2 942 aa21.72■■□□□ 1.07
COL27A1-207ENST00000494090 IKBKGQ9Y6K9 419 aa21.72■■□□□ 1.07
COL27A1-207ENST00000494090 CTAGE9A4FU28 777 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 CHST3Q7LGC8 479 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 IMPG2Q9BZV3 1241 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 KRT83P78385 493 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 UNC13AQ9UPW8 1703 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 IL13P35225 146 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 KRT2P35908 639 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 RRP36Q96EU6 259 aaKnown RBP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 NAP1L4Q99733 375 aaKnown RBP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 SYNCQ9H7C4 482 aa21.71■■□□□ 1.07
COL27A1-207ENST00000494090 DDX21Q9NR30 783 aaKnown RBP eCLIP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 RTCBQ9Y3I0 505 aaKnown RBP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 BLMP54132 1417 aaPredicted RBP21.71■■□□□ 1.07
COL27A1-207ENST00000494090 UBAP1LF5GYI3 381 aa21.7■■□□□ 1.07
COL27A1-207ENST00000494090 PHACTR2O75167 634 aa21.7■■□□□ 1.07
COL27A1-207ENST00000494090 ASIC1P78348 528 aa21.7■■□□□ 1.07
COL27A1-207ENST00000494090 TACC1O75410 805 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 G2E3Q7L622 706 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 IQSEC3Q9UPP2 1182 aaPredicted RBP21.7■■□□□ 1.06
COL27A1-207ENST00000494090 MAP3K19Q56UN5 1328 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 RPS6KB1P23443 525 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 GOLGA1Q92805 767 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 C19orf44Q9H6X5 657 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 SPDYE3A6NKU9 549 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 TRMT1LQ7Z2T5 733 aaKnown RBP21.7■■□□□ 1.06
COL27A1-207ENST00000494090 SIRT1Q96EB6 747 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 SELENOOQ9BVL4 669 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 ADGRL2O95490 1459 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 KRT79Q5XKE5 535 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 TRIM35Q9UPQ4 493 aa21.7■■□□□ 1.06
COL27A1-207ENST00000494090 UBE4AQ14139 1066 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 SREK1Q8WXA9 508 aaKnown RBP21.69■■□□□ 1.06
COL27A1-207ENST00000494090 IP6K1Q92551 441 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 IFNKQ9P0W0 207 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 GNA11P29992 359 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 CCDC155Q8N6L0 562 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 HOXB7P09629 217 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 PPM1EQ8WY54 764 aa21.69■■□□□ 1.06
COL27A1-207ENST00000494090 KIF4AO95239 1232 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 NCBP1Q09161 790 aaKnown RBP21.68■■□□□ 1.06
COL27A1-207ENST00000494090 LMBR1Q8WVP7 490 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 FERP16591 822 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 FAM160A1Q05DH4 1040 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 ACSBG1Q96GR2 724 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 MAST1Q9Y2H9 1570 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 KRT86O43790 486 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 OTUD7AQ8TE49 926 aaPredicted RBP21.68■■□□□ 1.06
COL27A1-207ENST00000494090 PPM1FP49593 454 aaPredicted RBP21.68■■□□□ 1.06
COL27A1-207ENST00000494090 TRERF1Q96PN7 1200 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 RASAL2Q9UJF2 1139 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 PARP3Q9Y6F1 533 aa21.68■■□□□ 1.06
COL27A1-207ENST00000494090 EDC4Q6P2E9 1401 aaKnown RBP21.67■■□□□ 1.06
COL27A1-207ENST00000494090 BICDL2A1A5D9 508 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 CHL1O00533 1208 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 SSX2IPQ9Y2D8 614 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.67■■□□□ 1.06
COL27A1-207ENST00000494090 RBSNQ9H1K0 784 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 IRS4O14654 1257 aaPredicted RBP21.67■■□□□ 1.06
COL27A1-207ENST00000494090 PICALMQ13492 652 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 FMNL3Q8IVF7 1028 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 MAGEB6Q8N7X4 407 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 SBNO2Q9Y2G9 1366 aa21.67■■□□□ 1.06
COL27A1-207ENST00000494090 ELP1O95163 1332 aa21.66■■□□□ 1.06
COL27A1-207ENST00000494090 GRIPAP1Q4V328 841 aa21.66■■□□□ 1.06
COL27A1-207ENST00000494090 CDCA7Q9BWT1 371 aaPredicted RBP21.66■■□□□ 1.06
COL27A1-207ENST00000494090 PCDH11XQ9BZA7 1347 aa21.66■■□□□ 1.06
COL27A1-207ENST00000494090 PCDH11YQ9BZA8 1340 aa21.66■■□□□ 1.06
COL27A1-207ENST00000494090 POLD1P28340 1107 aa21.66■■□□□ 1.06
COL27A1-207ENST00000494090 ZHX1Q9UKY1 873 aaPredicted RBP21.66■■□□□ 1.06
COL27A1-207ENST00000494090 KIF5AQ12840 1032 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms