RNA–Protein interactions for RNA: ENST00000493587.1

VPS13B-205, Transcript of vacuolar protein sorting 13 homolog B, humanhuman

TSL 2

Gene VPS13B, Length 3,485 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13B-205ENST00000493587 ERC2O15083 957 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 NEMFO60524 1076 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 SSBP05455 408 aaKnown RBP eCLIP7.9□□□□□ -1.14
VPS13B-205ENST00000493587 GPTP24298 496 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 CEP85LQ5SZL2 805 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 CADPS2Q86UW7 1296 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 SPDYE1Q8NFV5 336 aaPredicted RBP7.9□□□□□ -1.14
VPS13B-205ENST00000493587 ESF1Q9H501 851 aaKnown RBP7.9□□□□□ -1.14
VPS13B-205ENST00000493587 ARFGEF2Q9Y6D5 1785 aa7.9□□□□□ -1.14
VPS13B-205ENST00000493587 SOS1Q07889 1333 aaPredicted RBP7.9□□□□□ -1.15
VPS13B-205ENST00000493587 SHTN1A0MZ66 631 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 UBE2HP62256 183 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 E2F5Q15329 346 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 GGNBP2Q9H3C7 697 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 FAM169AQ9Y6X4 670 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 ATP10DQ9P241 1426 aa7.9□□□□□ -1.15
VPS13B-205ENST00000493587 WDR33Q9C0J8 1336 aaKnown RBP7.89□□□□□ -1.15
VPS13B-205ENST00000493587 USP4Q13107 963 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 MAP3K11Q16584 847 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 TSHZ1Q6ZSZ6 1077 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 C3orf20Q8ND61 904 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 NUDT16Q96DE0 195 aaKnown RBP7.89□□□□□ -1.15
VPS13B-205ENST00000493587 TMX3Q96JJ7 454 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 OVOS2A0A0G2JMS6 1433 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 CDKL5O76039 1030 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 BRD1O95696 1058 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 OATP04181 439 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 FBLN1P23142 703 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 ANO6Q4KMQ2 910 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 CCDC158Q5M9N0 1113 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 KCNV1Q6PIU1 500 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 LRRC8AQ8IWT6 810 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 TEX13AQ9BXU3 409 aaPredicted RBP7.89□□□□□ -1.15
VPS13B-205ENST00000493587 USP26Q9BXU7 913 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.89□□□□□ -1.152e-7■■■■■ 93.2
VPS13B-205ENST00000493587 ZRANB1Q9UGI0 708 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 MCM8Q9UJA3 840 aa7.89□□□□□ -1.15
VPS13B-205ENST00000493587 TPP2P29144 1249 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 TMPOP42166 694 aaKnown RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 LONRF2Q1L5Z9 754 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 MYSM1Q5VVJ2 828 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 ATL2Q8NHH9 583 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 SMARCC1Q92922 1105 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 RSRC1Q96IZ7 334 aaKnown RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 PHLPP1O60346 1717 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 MSH6P52701 1360 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 PXDNLA1KZ92 1463 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 PXDNQ92626 1479 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 ANKRD33BA6NCL7 494 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 SGSM2O43147 1006 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 CCDC144BQ3MJ40 725 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 RNF187Q5TA31 235 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 CCDC144CPQ8IYA2 1237 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 CEP112Q8N8E3 955 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 NUP62CLQ9H1M0 184 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 DDX19BQ9UMR2 479 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 A0A1B0GUL6 1792 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 RTL1A6NKG5 1358 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 MYO1FO00160 1098 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 ERLIN1O75477 346 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 PECAM1P16284 738 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 TYRO3Q06418 890 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 INF2Q27J81 1249 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 HSP90AB4PQ58FF6 505 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 NYAP1Q6ZVC0 841 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 ZNF396Q96N95 335 aaPredicted RBP7.88□□□□□ -1.15
VPS13B-205ENST00000493587 YIPF3Q9GZM5 350 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 MAF1Q9H063 256 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 TNMDQ9H2S6 317 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 AMOTL2Q9Y2J4 779 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 USP16Q9Y5T5 823 aa7.88□□□□□ -1.15
VPS13B-205ENST00000493587 GOLGA6CA6NDK9 693 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 GOLGA6BA6NDN3 693 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 PPP1R12BO60237 982 aaPredicted RBP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 GOLGA6DP0CG33 693 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 NEFHP12036 1026 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ZNF165P49910 485 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 HDGFP51858 240 aaKnown RBP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 APOBRQ0VD83 1088 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ARMC9Q7Z3E5 817 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 KIAA0825Q8IV33 1275 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 THEMISQ8N1K5 641 aaPredicted RBP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ZKSCAN4Q969J2 545 aaPredicted RBP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 FAM204AQ9H8W3 233 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 GOLGA6AQ9NYA3 693 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 MIS18AQ9NYP9 233 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 AKAP2Q9Y2D5 859 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 EXOC5O00471 708 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 LAMB3Q13751 1172 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 CBX8Q9HC52 389 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ATP6V1DQ9Y5K8 247 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 NRAPQ86VF7 1730 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ERBB3P21860 1342 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 EFCAB8A8MWE9 144 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 HMMRO75330 724 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 GRIK3Q13003 919 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 HDXQ7Z353 690 aa7.87□□□□□ -1.15
VPS13B-205ENST00000493587 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.87□□□□□ -1.15
VPS13B-205ENST00000493587 AFAP1L1Q8TED9 768 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms