RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 ZNF157P51786 506 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-212ENST00000493341 COL13A1Q5TAT6 717 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-212ENST00000493341 NLRP8Q86W28 1048 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 ASAP3Q8TDY4 903 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 SEC31BQ9NQW1 1179 aa6.53□□□□□ -1.36
VPS13A-212ENST00000493341 KCNQ4P56696 695 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 SEPT6Q14141 434 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 DDR2Q16832 855 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 SAMD5Q5TGI4 173 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 HHIPQ96QV1 700 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 CCDC113Q9H0I3 377 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 ACTR10Q9NZ32 417 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 PRKAB1Q9Y478 270 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 GDF9O60383 454 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 F11P03951 625 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 NFKB1P19838 968 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 HYAL2Q12891 473 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 CWF19L2Q2TBE0 894 aaKnown RBP6.52□□□□□ -1.37
VPS13A-212ENST00000493341 EFHC2Q5JST6 749 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 HOMER1Q86YM7 354 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 TRPM4Q8TD43 1214 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 PLD4Q96BZ4 506 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 NSUN5Q96P11 429 aaKnown RBP6.52□□□□□ -1.37
VPS13A-212ENST00000493341 DZANK1Q9NVP4 752 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 MSRB2Q9Y3D2 182 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 PCDHB5Q9Y5E4 795 aa6.52□□□□□ -1.37
VPS13A-212ENST00000493341 DCDC2BA2VCK2 349 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 PDPK1O15530 556 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 ITPKAP23677 461 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 GYS2P54840 703 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 PPP2R5EQ16537 467 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 LARP1BQ659C4 914 aaKnown RBP6.51□□□□□ -1.37
VPS13A-212ENST00000493341 GK5Q6ZS86 529 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 MIR1-1HGQ9H1L0 117 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 MAPK8IP1Q9UQF2 711 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 ROBO2Q9HCK4 1378 aa6.51□□□□□ -1.37
VPS13A-212ENST00000493341 A0A096LPE4 126 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 A0A1W2PPZ6 126 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 KHNYNO15037 678 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 EIF5BO60841 1220 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 PARNO95453 639 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 GIPRP48546 466 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 RPS26P62854 115 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 CEP120Q8N960 986 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 GATAD2BQ8WXI9 593 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 TLR7Q9NYK1 1049 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 DYRK1BQ9Y463 629 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 KIF4AO95239 1232 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 ZNF165P49910 485 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 PLAURQ03405 335 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 FAAP100Q0VG06 881 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 MRPL14Q6P1L8 145 aaKnown RBP6.5□□□□□ -1.37
VPS13A-212ENST00000493341 TNKS2Q9H2K2 1166 aa6.5□□□□□ -1.37
VPS13A-212ENST00000493341 ATXN7O15265 892 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-212ENST00000493341 SOX18P35713 384 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 MTERF2Q49AM1 385 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 ARSHQ5FYA8 562 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 RPUSD2Q8IZ73 545 aaKnown RBP6.49□□□□□ -1.37
VPS13A-212ENST00000493341 BRMS1Q9HCU9 246 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 TMEM39AQ9NV64 488 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 LEMD3Q9Y2U8 911 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 AMPD3Q01432 767 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 RASGRF1Q13972 1273 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 MPP2Q14168 576 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 FXNQ16595 210 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 RAB44Q7Z6P3 723 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-212ENST00000493341 BHMTQ93088 406 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 NXPE3Q969Y0 559 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 ZNF576Q9H609 170 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 PPME1Q9Y570 386 aa6.49□□□□□ -1.37
VPS13A-212ENST00000493341 EFSO43281 561 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 BPNT1O95861 308 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 SQSTM1Q13501 440 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 TAF7LQ5H9L4 462 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 KANK3Q6NY19 840 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 FIGNL1Q6PIW4 674 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 DHX32Q7L7V1 743 aaKnown RBP6.48□□□□□ -1.37
VPS13A-212ENST00000493341 KIAA0907Q7Z7F0 614 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-212ENST00000493341 LRRC3Q9BY71 257 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 BHLHE41Q9C0J9 482 aaPredicted RBP6.48□□□□□ -1.37
VPS13A-212ENST00000493341 TMEM260Q9NX78 707 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 DDX56Q9NY93 547 aaKnown RBP6.48□□□□□ -1.37
VPS13A-212ENST00000493341 PFDN2Q9UHV9 154 aa6.48□□□□□ -1.37
VPS13A-212ENST00000493341 G3BP2Q9UN86 482 aaKnown RBP6.48□□□□□ -1.37
VPS13A-212ENST00000493341 FAM221AA4D161 298 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 NFKBIEO00221 500 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 PDE2AO00408 941 aaPredicted RBP6.47□□□□□ -1.37
VPS13A-212ENST00000493341 DDAH1O94760 285 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 FAM157BP0CG42 384 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 CLCQ05315 142 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 PPP2R3AQ06190 1150 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 SCARF1Q14162 830 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 DIEXFQ68CQ4 756 aaKnown RBP6.47□□□□□ -1.37
VPS13A-212ENST00000493341 RIPOR1Q6ZS17 1223 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 C16orf86Q6ZW13 317 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 REC114Q7Z4M0 266 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 STRN4Q9NRL3 753 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 SPEM2Q0P670 501 aa6.47□□□□□ -1.37
VPS13A-212ENST00000493341 PLEKHG6Q3KR16 790 aa6.47□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms