RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 GPT2Q8TD30 523 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 LLPHQ9BRT6 129 aaKnown RBP12.76□□□□□ -0.37
USP4-214ENST00000491791 GZF1Q9H116 711 aaPredicted RBP12.76□□□□□ -0.37
USP4-214ENST00000491791 MTMR6Q9Y217 621 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 ZNF652Q9Y2D9 606 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 TAF6LQ9Y6J9 622 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 WDR19Q8NEZ3 1342 aa12.76□□□□□ -0.37
USP4-214ENST00000491791 ZMYM6O95789 1325 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 GJB2P29033 226 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 NOL8Q76FK4 1167 aaKnown RBP12.75□□□□□ -0.37
USP4-214ENST00000491791 GAS2L3Q86XJ1 694 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 CCDC83Q8IWF9 413 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 OSBP2Q969R2 916 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.75□□□□□ -0.37
USP4-214ENST00000491791 CNNM1Q9NRU3 951 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 NDUFB9Q9Y6M9 179 aa12.75□□□□□ -0.37
USP4-214ENST00000491791 LAMA4Q16363 1823 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 SCN7AQ01118 1682 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 PFKFB2O60825 505 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 YBX3P16989 372 aaKnown RBP eCLIP12.74□□□□□ -0.37
USP4-214ENST00000491791 SCARF1Q14162 830 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 SF3B3Q15393 1217 aaKnown RBP12.74□□□□□ -0.37
USP4-214ENST00000491791 CSPP1Q1MSJ5 1256 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 ZSCAN23Q3MJ62 389 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 CCDC152Q4G0S7 254 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 CCDC129Q6ZRS4 1044 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 STOX1Q6ZVD7 989 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 SMARCC2Q8TAQ2 1214 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 GTF3C6Q969F1 213 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 ZNF274Q96GC6 653 aaPredicted RBP12.74□□□□□ -0.37
USP4-214ENST00000491791 DOCK2Q92608 1830 aa12.74□□□□□ -0.37
USP4-214ENST00000491791 M0R2C6 588 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 FOXP2O15409 715 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 CHGBP05060 677 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 ADD2P35612 726 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 MCAMP43121 646 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 ZAP70P43403 619 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 COL9A3Q14050 684 aaPredicted RBP12.73□□□□□ -0.37
USP4-214ENST00000491791 ALX1Q15699 326 aa12.73□□□□□ -0.37
USP4-214ENST00000491791 ELP1O95163 1332 aa12.72□□□□□ -0.37
USP4-214ENST00000491791 E7EWF7 191 aa12.72□□□□□ -0.37
USP4-214ENST00000491791 SLC5A1P13866 664 aa12.72□□□□□ -0.37
USP4-214ENST00000491791 FKBP4Q02790 459 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP4-214ENST00000491791 CCDC102BQ68D86 513 aa12.72□□□□□ -0.37
USP4-214ENST00000491791 SYAP1Q96A49 352 aaPredicted RBP12.72□□□□□ -0.37
USP4-214ENST00000491791 TCRBV5S4A2TA0A5A2 114 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 IGSF3O75054 1194 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 PHF14O94880 888 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 LETM1O95202 739 aaPredicted RBP12.71□□□□□ -0.37
USP4-214ENST00000491791 UBE2HP62256 183 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 LARP1BQ659C4 914 aaKnown RBP12.71□□□□□ -0.37
USP4-214ENST00000491791 Q6ZUG5 572 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 USP48Q86UV5 1035 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 NECAB1Q8N987 351 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 LINC00116Q8NCU8 138 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 CDC5LQ99459 802 aaKnown RBP12.71□□□□□ -0.37
USP4-214ENST00000491791 BRPF3Q9ULD4 1205 aa12.71□□□□□ -0.37
USP4-214ENST00000491791 CARMIL3Q8ND23 1372 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 RPS6KA4O75676 772 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 FGAP02671 866 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 NCLP19338 710 aaKnown RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 HMGN5P82970 282 aaKnown RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 IMMTQ16891 758 aaKnown RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 CAVIN1Q6NZI2 390 aaKnown RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 LRSAM1Q6UWE0 723 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 PPP1R9BQ96SB3 815 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 GPBP1L1Q9HC44 474 aaPredicted RBP12.7□□□□□ -0.38
USP4-214ENST00000491791 TMEM63CQ9P1W3 806 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 NIP7Q9Y221 180 aaKnown RBP eCLIP12.7□□□□□ -0.38
USP4-214ENST00000491791 C4BP0C0L5 1744 aa12.7□□□□□ -0.38
USP4-214ENST00000491791 ZNF804BA4D1E1 1349 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 SALL1Q9NSC2 1324 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 GPAA1O43292 621 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 HCLS1P14317 486 aaPredicted RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 IGHMBP2P38935 993 aaKnown RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 NAA16Q6N069 864 aaPredicted RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 TMED8Q6PL24 325 aaPredicted RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 MB21D2Q8IYB1 491 aaPredicted RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 CCDC85AQ96PX6 553 aaPredicted RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 MPHOSPH8Q99549 860 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 LARP6Q9BRS8 491 aaKnown RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 PUS7LQ9H0K6 701 aaKnown RBP12.69□□□□□ -0.38
USP4-214ENST00000491791 NARFQ9UHQ1 456 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 KIF3AQ9Y496 699 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 TAF1LQ8IZX4 1826 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 A0A1B0GUL6 1792 aa12.69□□□□□ -0.38
USP4-214ENST00000491791 PDS5AQ29RF7 1337 aaKnown RBP12.68□□□□□ -0.38
USP4-214ENST00000491791 PDE6AP16499 860 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 PHKA1P46020 1223 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 ATL3Q6DD88 541 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 FAM43AQ8N2R8 423 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 SPATA5Q8NB90 893 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 NYXQ9GZU5 481 aa12.68□□□□□ -0.38
USP4-214ENST00000491791 ZSCAN16Q9H4T2 348 aaPredicted RBP12.68□□□□□ -0.38
USP4-214ENST00000491791 PIH1D3Q9NQM4 214 aaKnown RBP12.68□□□□□ -0.38
USP4-214ENST00000491791 BSDC1Q9NW68 430 aaPredicted RBP12.68□□□□□ -0.38
USP4-214ENST00000491791 NSFL1CQ9UNZ2 370 aaKnown RBP12.68□□□□□ -0.38
USP4-214ENST00000491791 GNPATO15228 680 aa12.67□□□□□ -0.38
USP4-214ENST00000491791 SCRN1Q12765 414 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms