RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 SLC27A2O14975 620 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 RNF113AO15541 343 aaKnown RBP14.54□□□□□ -0.08
HDAC6-230ENST00000488543 ARID4AP29374 1257 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-230ENST00000488543 HOXA10P31260 410 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-230ENST00000488543 MCM2P49736 904 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 ADCK5Q3MIX3 580 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 TXNRD3Q86VQ6 643 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 GPR101Q96P66 508 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-230ENST00000488543 HELLSQ9NRZ9 838 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 ANKIB1Q9P2G1 1089 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 DOCK2Q92608 1830 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 ANKRD31Q8N7Z5 1873 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 TMX3Q96JJ7 454 aa14.54□□□□□ -0.08
HDAC6-230ENST00000488543 ATF5Q9Y2D1 282 aaPredicted RBP14.54□□□□□ -0.08
HDAC6-230ENST00000488543 CHRNA5P30532 468 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 TM6SF1Q9BZW5 370 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 TAF6LQ9Y6J9 622 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 RPAP1Q9BWH6 1393 aaPredicted RBP14.53□□□□□ -0.08
HDAC6-230ENST00000488543 MAST3O60307 1309 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 PDE6BP35913 854 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 UBE4AQ14139 1066 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 ZNF622Q969S3 477 aaKnown RBP eCLIP14.53□□□□□ -0.08
HDAC6-230ENST00000488543 GBP4Q96PP9 640 aa14.53□□□□□ -0.08
HDAC6-230ENST00000488543 NSFL1CQ9UNZ2 370 aaKnown RBP14.53□□□□□ -0.08
HDAC6-230ENST00000488543 NRXN2Q9P2S2 1712 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 PSDA5PKW4 1024 aaPredicted RBP14.52□□□□□ -0.08
HDAC6-230ENST00000488543 KCNJ4P48050 445 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 CUL4AQ13619 759 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 RASGRF1Q13972 1273 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 FOXD4L5Q5VV16 416 aaPredicted RBP14.52□□□□□ -0.08
HDAC6-230ENST00000488543 FOXD4L4Q8WXT5 416 aaPredicted RBP14.52□□□□□ -0.08
HDAC6-230ENST00000488543 CRAMP1Q96RY5 1269 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 ZSWIM6Q9HCJ5 1215 aa14.52□□□□□ -0.08
HDAC6-230ENST00000488543 M0R2C6 588 aa14.52□□□□□ -0.09
HDAC6-230ENST00000488543 CYP2E1P05181 493 aaPredicted RBP14.52□□□□□ -0.09
HDAC6-230ENST00000488543 CPA1P15085 419 aa14.52□□□□□ -0.09
HDAC6-230ENST00000488543 GPSM2P81274 684 aa14.52□□□□□ -0.09
HDAC6-230ENST00000488543 ZGPATQ8N5A5 531 aaKnown RBP14.52□□□□□ -0.09
HDAC6-230ENST00000488543 FAM84BQ96KN1 310 aaPredicted RBP14.52□□□□□ -0.09
HDAC6-230ENST00000488543 JAKMIP1Q96N16 626 aaKnown RBP14.52□□□□□ -0.09
HDAC6-230ENST00000488543 HMG20BQ9P0W2 317 aa14.52□□□□□ -0.09
HDAC6-230ENST00000488543 ZNF804BA4D1E1 1349 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 BBOX1O75936 387 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 UQCRFS1P1P0C7P4 283 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 CASTP20810 708 aaKnown RBP14.51□□□□□ -0.09
HDAC6-230ENST00000488543 MRE11P49959 708 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 COL9A3Q14050 684 aaPredicted RBP14.51□□□□□ -0.09
HDAC6-230ENST00000488543 C2CD5Q86YS7 1000 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 OSBP2Q969R2 916 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 ANKRD2Q9GZV1 360 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 LAMA4Q16363 1823 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 NPR1P16066 1061 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 TSGA10IPQ3SY00 556 aa14.51□□□□□ -0.09
HDAC6-230ENST00000488543 PIH1D3Q9NQM4 214 aaKnown RBP14.51□□□□□ -0.09
HDAC6-230ENST00000488543 ZFYP08048 801 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 ZKSCAN1P17029 563 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 VPS53Q5VIR6 699 aa14.5□□□□□ -0.09
HDAC6-230ENST00000488543 NOL8Q76FK4 1167 aaKnown RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 ZNF219Q9P2Y4 722 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 U3KPZ7 1027 aaPredicted RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 BAG4O95429 457 aaKnown RBP14.5□□□□□ -0.09
HDAC6-230ENST00000488543 AK2P54819 239 aa14.5□□□□□ -0.09
HDAC6-230ENST00000488543 MCTP1Q6DN14 999 aa14.5□□□□□ -0.09
HDAC6-230ENST00000488543 SPATA5Q8NB90 893 aa14.5□□□□□ -0.09
HDAC6-230ENST00000488543 MASTLQ96GX5 879 aa14.5□□□□□ -0.09
HDAC6-230ENST00000488543 H0YIN7 160 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 PPEF1O14829 653 aaPredicted RBP14.49□□□□□ -0.09
HDAC6-230ENST00000488543 RUFY3Q7L099 469 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 VPS37DQ86XT2 251 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 SLC16A10Q8TF71 515 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 DSCC1Q9BVC3 393 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 POLLQ9UGP5 575 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 QSER1Q2KHR3 1735 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 NCLP19338 710 aaKnown RBP14.49□□□□□ -0.09
HDAC6-230ENST00000488543 LRRFIP1Q32MZ4 808 aaKnown RBP14.49□□□□□ -0.09
HDAC6-230ENST00000488543 CAVIN4Q5BKX8 364 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 RNF20Q5VTR2 975 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 JAG2Q9Y219 1238 aa14.49□□□□□ -0.09
HDAC6-230ENST00000488543 XDHP47989 1333 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 ADD2P35612 726 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 FBXO33Q7Z6M2 555 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 APPBP2Q92624 585 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 WWC3Q9ULE0 1092 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 CYP46A1Q9Y6A2 500 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 FOXP2O15409 715 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 UFL1O94874 794 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 HSPD1P10809 573 aaKnown RBP14.48□□□□□ -0.09
HDAC6-230ENST00000488543 ALDH1B1P30837 517 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 TTF1Q15361 905 aaPredicted RBP14.48□□□□□ -0.09
HDAC6-230ENST00000488543 ILDR2Q71H61 639 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 CWC22Q9HCG8 908 aaKnown RBP14.48□□□□□ -0.09
HDAC6-230ENST00000488543 PDRG1Q9NUG6 133 aa14.48□□□□□ -0.09
HDAC6-230ENST00000488543 DDX49Q9Y6V7 483 aaKnown RBP14.48□□□□□ -0.09
HDAC6-230ENST00000488543 IRS2Q9Y4H2 1338 aa14.47□□□□□ -0.09
HDAC6-230ENST00000488543 A0A0G2JLW4 131 aa14.47□□□□□ -0.09
HDAC6-230ENST00000488543 IDH1O75874 414 aaKnown RBP14.47□□□□□ -0.09
HDAC6-230ENST00000488543 CYP21A2P08686 494 aa14.47□□□□□ -0.09
HDAC6-230ENST00000488543 HIBADHP31937 336 aaKnown RBP14.47□□□□□ -0.09
HDAC6-230ENST00000488543 ATP6V0A2Q9Y487 856 aa14.47□□□□□ -0.09
HDAC6-230ENST00000488543 SP8Q8IXZ3 490 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms