RNA–Protein interactions for RNA: ENST00000487043.5

PTCD3-216, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 1,054 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-216ENST00000487043 NBPF11Q86T75 865 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 SLC43A3Q8NBI5 491 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 PMEPA1Q969W9 287 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 PRKAG2Q9UGJ0 569 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 DDX41Q9UJV9 622 aaKnown RBP6.13□□□□□ -1.43
PTCD3-216ENST00000487043 INPP5FQ9Y2H2 1132 aa6.13□□□□□ -1.43
PTCD3-216ENST00000487043 CYP2E1P05181 493 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-216ENST00000487043 DNAJA1P31689 397 aaKnown RBP6.12□□□□□ -1.43
PTCD3-216ENST00000487043 RAC1P63000 192 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 PTPN12Q05209 780 aaKnown RBP6.12□□□□□ -1.43
PTCD3-216ENST00000487043 GRM2Q14416 872 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 ARTNQ5T4W7 220 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 SRCIN1Q9C0H9 1055 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 EHD4Q9H223 541 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 JPH1Q9HDC5 661 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-216ENST00000487043 KANSL3Q9P2N6 904 aa6.12□□□□□ -1.43
PTCD3-216ENST00000487043 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.12□□□□□ -1.43
PTCD3-216ENST00000487043 TARSP26639 723 aaKnown RBP6.11□□□□□ -1.43
PTCD3-216ENST00000487043 C20orf204Q6ZNR8 217 aa6.11□□□□□ -1.43
PTCD3-216ENST00000487043 NUDT8Q8WV74 236 aa6.11□□□□□ -1.43
PTCD3-216ENST00000487043 DHX38Q92620 1227 aaKnown RBP6.11□□□□□ -1.43
PTCD3-216ENST00000487043 SRA1Q9HD15 236 aaKnown RBP6.11□□□□□ -1.43
PTCD3-216ENST00000487043 LATS2Q9NRM7 1088 aa6.11□□□□□ -1.43
PTCD3-216ENST00000487043 PPP4R2Q9NY27 417 aa6.11□□□□□ -1.43
PTCD3-216ENST00000487043 A0A0A0MRY4 1105 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 ELNP15502 786 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 SELPP16109 830 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 ATP2B1P20020 1258 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 GSTT1P30711 240 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 GTF2F1P35269 517 aaKnown RBP eCLIP6.1□□□□□ -1.43
PTCD3-216ENST00000487043 ST13P50502 369 aaKnown RBP6.1□□□□□ -1.43
PTCD3-216ENST00000487043 CCINQ13939 588 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 MBTPS1Q14703 1052 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 DNAJC2Q99543 621 aaKnown RBP6.1□□□□□ -1.43
PTCD3-216ENST00000487043 C11orf16Q9NQ32 467 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 SLC6A14Q9UN76 642 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 TTF2Q9UNY4 1162 aaKnown RBP6.1□□□□□ -1.43
PTCD3-216ENST00000487043 SCRIBQ14160 1630 aa6.1□□□□□ -1.43
PTCD3-216ENST00000487043 A0A1W2PP55 124 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 MMP20O60882 483 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 RARAP10276 462 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 EDN3P14138 238 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 FCGRTP55899 365 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 NRG1Q02297 640 aaPredicted RBP6.09□□□□□ -1.43
PTCD3-216ENST00000487043 ARID5AQ03989 594 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 ADGRE1Q14246 886 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 KIAA0319Q5VV43 1072 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 TXNRD3Q86VQ6 643 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 PNMA5Q96PV4 448 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 KRTAP9-2Q9BYQ4 174 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 GSX2Q9BZM3 304 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 COPRSQ9NQ92 184 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 USP21Q9UK80 565 aa6.09□□□□□ -1.43
PTCD3-216ENST00000487043 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.08□□□□□ -1.44
PTCD3-216ENST00000487043 H2AFB1P0C5Y9 115 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 H2AFB2P0C5Z0 115 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 PEAR1Q5VY43 1037 aaPredicted RBP6.08□□□□□ -1.44
PTCD3-216ENST00000487043 PSAPL1Q6NUJ1 521 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 SHISA2Q6UWI4 295 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 VPS37DQ86XT2 251 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 FAM177A1Q8N128 213 aaPredicted RBP6.08□□□□□ -1.44
PTCD3-216ENST00000487043 GLIS3Q8NEA6 775 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 OR13H1Q8NG92 308 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 TP53INP1Q96A56 240 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 LENG1Q96BZ8 264 aaPredicted RBP6.08□□□□□ -1.44
PTCD3-216ENST00000487043 LIN7BQ9HAP6 207 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 ZFATQ9P243 1243 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 TRAK1Q9UPV9 953 aa6.08□□□□□ -1.44
PTCD3-216ENST00000487043 F6X3S4 739 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 RGS9O75916 674 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-216ENST00000487043 NFKB1P19838 968 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 PAK2Q13177 524 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 DPH6Q7L8W6 267 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 ERMP1Q7Z2K6 904 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 NCAPG2Q86XI2 1143 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 DMRTC2Q8IXT2 367 aaPredicted RBP6.07□□□□□ -1.44
PTCD3-216ENST00000487043 KBTBD4Q9NVX7 518 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 DNAJB12Q9NXW2 375 aaKnown RBP6.07□□□□□ -1.44
PTCD3-216ENST00000487043 SALL4Q9UJQ4 1053 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 AKAP2Q9Y2D5 859 aa6.07□□□□□ -1.44
PTCD3-216ENST00000487043 KRTAP9-6A0A140TA67 174 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 SMARCA5O60264 1052 aaPredicted RBP6.06□□□□□ -1.44
PTCD3-216ENST00000487043 PSAPP07602 524 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 CCDC85BQ15834 202 aaPredicted RBP6.06□□□□□ -1.44
PTCD3-216ENST00000487043 DTHD1Q6ZMT9 781 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 C3orf58Q8NDZ4 430 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 GMLQ99445 158 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 EFCC1Q9HA90 598 aa6.06□□□□□ -1.44
PTCD3-216ENST00000487043 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.06□□□□□ -1.44
PTCD3-216ENST00000487043 TMEM238LA0A1B0GVL6 79 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 FBXO24O75426 580 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 TRPA1O75762 1119 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 ACPPP15309 386 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 AFF1P51825 1210 aaKnown RBP6.05□□□□□ -1.44
PTCD3-216ENST00000487043 HYAL2Q12891 473 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 LRP8Q14114 963 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 MAP3K11Q16584 847 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 COL13A1Q5TAT6 717 aaPredicted RBP6.05□□□□□ -1.44
PTCD3-216ENST00000487043 RELL1Q8IUW5 271 aa6.05□□□□□ -1.44
PTCD3-216ENST00000487043 PMFBP1Q8TBY8 1022 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms