RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 EREGO14944 169 aa6.78□□□□□ -1.32
VPS50-217ENST00000485140 ZNF211Q13398 564 aaPredicted RBP6.78□□□□□ -1.32
VPS50-217ENST00000485140 MTMR3Q13615 1198 aa6.78□□□□□ -1.32
VPS50-217ENST00000485140 CPSF6Q16630 551 aaKnown RBP eCLIP6.78□□□□□ -1.32
VPS50-217ENST00000485140 INTS5Q6P9B9 1019 aaKnown RBP6.78□□□□□ -1.32
VPS50-217ENST00000485140 GALNT12Q8IXK2 581 aa6.78□□□□□ -1.32
VPS50-217ENST00000485140 FAM46AQ96IP4 442 aaKnown RBP6.78□□□□□ -1.32
VPS50-217ENST00000485140 ZKSCAN3Q9BRR0 538 aa6.78□□□□□ -1.32
VPS50-217ENST00000485140 RUSC1Q9BVN2 902 aa6.78□□□□□ -1.32
VPS50-217ENST00000485140 SH2B1Q9NRF2 756 aaPredicted RBP6.78□□□□□ -1.32
VPS50-217ENST00000485140 GAS2O43903 313 aaKnown RBP6.77□□□□□ -1.33
VPS50-217ENST00000485140 PTPN12Q05209 780 aaKnown RBP6.77□□□□□ -1.33
VPS50-217ENST00000485140 KIAA1211Q6ZU35 1233 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 CLEC10AQ8IUN9 316 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 KLHDC7BQ96G42 594 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 CARD10Q9BWT7 1032 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 SUGCTQ9HAC7 445 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 TRAK1Q9UPV9 953 aa6.77□□□□□ -1.33
VPS50-217ENST00000485140 PATL2C9JE40 543 aaKnown RBP6.76□□□□□ -1.33
VPS50-217ENST00000485140 CPNE3O75131 537 aaKnown RBP6.76□□□□□ -1.33
VPS50-217ENST00000485140 ALX3O95076 343 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 IGLV1-40P01703 118 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 CYP11A1P05108 521 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 NUTM2GQ5VZR2 741 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 TXNDC11Q6PKC3 985 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.76□□□□□ -1.33
VPS50-217ENST00000485140 SLC7A3Q8WY07 619 aa6.76□□□□□ -1.33
VPS50-217ENST00000485140 BRD1O95696 1058 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 CDC25BP30305 580 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 KIAA0319Q5VV43 1072 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 TXNDC2Q86VQ3 553 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 SMG8Q8ND04 991 aaKnown RBP6.75□□□□□ -1.33
VPS50-217ENST00000485140 ASAP3Q8TDY4 903 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 FOXD4L4Q8WXT5 416 aaPredicted RBP6.75□□□□□ -1.33
VPS50-217ENST00000485140 DBNDD2Q9BQY9 259 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 CLEC4MQ9H2X3 399 aaPredicted RBP6.75□□□□□ -1.33
VPS50-217ENST00000485140 CCDC87Q9NVE4 849 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 PPP4R2Q9NY27 417 aa6.75□□□□□ -1.33
VPS50-217ENST00000485140 FOXD3Q9UJU5 478 aaPredicted RBP6.75□□□□□ -1.33
VPS50-217ENST00000485140 A6NHS1 94 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 TM4SF5O14894 197 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 RPS26P11Q5JNZ5 115 aaPredicted RBP6.74□□□□□ -1.33
VPS50-217ENST00000485140 RNF43Q68DV7 783 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 VN1R5Q7Z5H4 357 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 CCNJLQ8IV13 435 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 FAM20CQ8IXL6 584 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 AGGF1Q8N302 714 aaeCLIP6.74□□□□□ -1.33
VPS50-217ENST00000485140 ALKBH8Q96BT7 664 aaKnown RBP6.74□□□□□ -1.33
VPS50-217ENST00000485140 UBL7Q96S82 380 aaPredicted RBP6.74□□□□□ -1.33
VPS50-217ENST00000485140 FAM129BQ96TA1 746 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 FAM83CQ9BQN1 747 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 LIN7BQ9HAP6 207 aa6.74□□□□□ -1.33
VPS50-217ENST00000485140 GNEQ9Y223 722 aaKnown RBP6.74□□□□□ -1.33
VPS50-217ENST00000485140 COBLO75128 1261 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 WISP1O95388 367 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 ESRRAP11474 423 aaPredicted RBP6.73□□□□□ -1.33
VPS50-217ENST00000485140 NLRP12P59046 1061 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 NFIAQ12857 509 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 EXOSC6Q5RKV6 272 aaKnown RBP6.73□□□□□ -1.33
VPS50-217ENST00000485140 RETREG2Q8NC44 543 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 TMC1Q8TDI8 760 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 RBCK1Q9BYM8 510 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 ANO2Q9NQ90 1003 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 KCNK4Q9NYG8 393 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 SYNGAP1Q96PV0 1343 aa6.73□□□□□ -1.33
VPS50-217ENST00000485140 A0A096LPE4 126 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 A0A1W2PPZ6 126 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 SOX1O00570 391 aaPredicted RBP6.72□□□□□ -1.33
VPS50-217ENST00000485140 ADAM11O75078 769 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 XRCC5P13010 732 aaKnown RBP6.72□□□□□ -1.33
VPS50-217ENST00000485140 SERPINB4P48594 390 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 ARHGAP4P98171 946 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 PCDH1Q08174 1060 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 AP3B2Q13367 1082 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 PEAR1Q5VY43 1037 aaPredicted RBP6.72□□□□□ -1.33
VPS50-217ENST00000485140 UBASH3BQ8TF42 649 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 USP26Q9BXU7 913 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 TMPRSS13Q9BYE2 586 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 PCMTD2Q9NV79 361 aa6.72□□□□□ -1.33
VPS50-217ENST00000485140 A0A1W2PP55 124 aa6.71□□□□□ -1.34
VPS50-217ENST00000485140 HYAL3O43820 417 aaPredicted RBP6.71□□□□□ -1.34
VPS50-217ENST00000485140 PRPF40BQ6NWY9 871 aaKnown RBP6.71□□□□□ -1.34
VPS50-217ENST00000485140 BEND4Q6ZU67 534 aa6.71□□□□□ -1.34
VPS50-217ENST00000485140 ARMC10Q8N2F6 343 aa6.71□□□□□ -1.34
VPS50-217ENST00000485140 METTL22Q9BUU2 404 aaPredicted RBP6.71□□□□□ -1.34
VPS50-217ENST00000485140 EHD4Q9H223 541 aa6.71□□□□□ -1.34
VPS50-217ENST00000485140 C7orf69Q9H7B7 122 aa6.71□□□□□ -1.34
VPS50-217ENST00000485140 KRTAP4-8A0A0G2JLE6 195 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 LOC100289279A0A1B0GTE1 492 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 BMP3P12645 472 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 ACPPP15309 386 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 GSTM4Q03013 218 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 C12orf50Q8NA57 414 aaPredicted RBP6.7□□□□□ -1.34
VPS50-217ENST00000485140 ARID3AQ99856 593 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 KCNF1Q9H3M0 494 aa6.7□□□□□ -1.34
VPS50-217ENST00000485140 DDX3YO15523 660 aaKnown RBP6.69□□□□□ -1.34
VPS50-217ENST00000485140 TIAF1O95411 115 aa6.69□□□□□ -1.34
VPS50-217ENST00000485140 B3GALT4O96024 378 aa6.69□□□□□ -1.34
VPS50-217ENST00000485140 ITPKAP23677 461 aa6.69□□□□□ -1.34
VPS50-217ENST00000485140 PREPP48147 710 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms