RNA–Protein interactions for RNA: ENST00000481999.1

CHD3-211, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 2,515 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-211ENST00000481999 ZPR1O75312 459 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 SYT1P21579 422 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 Q6ZUG5 572 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 GPHNQ9NQX3 736 aaPredicted RBP17.16■□□□□ 0.34
CHD3-211ENST00000481999 SBF2Q86WG5 1849 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 GPAA1O43292 621 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 KLRK1P26718 216 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 NBPF5PQ86XG9 351 aaPredicted RBP17.16■□□□□ 0.34
CHD3-211ENST00000481999 SMC3Q9UQE7 1217 aa17.16■□□□□ 0.34
CHD3-211ENST00000481999 FGAP02671 866 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 GYG1P46976 350 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 TSGA10IPQ3SY00 556 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 BRF1Q92994 677 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 AK7Q96M32 723 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 SETDB2Q96T68 719 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 CASZ1Q86V15 1759 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 LAMA4Q16363 1823 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 TRIM37O94972 964 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 DSCC1Q9BVC3 393 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 ZNF532Q9HCE3 1301 aa17.15■□□□□ 0.34
CHD3-211ENST00000481999 E7EWF7 191 aa17.14■□□□□ 0.33
CHD3-211ENST00000481999 ARID4AP29374 1257 aaPredicted RBP17.14■□□□□ 0.33
CHD3-211ENST00000481999 SPATA5Q8NB90 893 aa17.14■□□□□ 0.33
CHD3-211ENST00000481999 APPBP2Q92624 585 aa17.14■□□□□ 0.33
CHD3-211ENST00000481999 SLC5A1P13866 664 aa17.14■□□□□ 0.33
CHD3-211ENST00000481999 ADD2P35612 726 aa17.14■□□□□ 0.33
CHD3-211ENST00000481999 RBM27Q9P2N5 1060 aaKnown RBP17.14■□□□□ 0.33
CHD3-211ENST00000481999 JAK2O60674 1132 aa17.13■□□□□ 0.33
CHD3-211ENST00000481999 WDR33Q9C0J8 1336 aaKnown RBP17.13■□□□□ 0.33
CHD3-211ENST00000481999 SCN7AQ01118 1682 aa17.13■□□□□ 0.33
CHD3-211ENST00000481999 TAF1LQ8IZX4 1826 aa17.13■□□□□ 0.33
CHD3-211ENST00000481999 MYH7P12883 1935 aa17.13■□□□□ 0.33
CHD3-211ENST00000481999 PDE6AP16499 860 aa17.13■□□□□ 0.33
CHD3-211ENST00000481999 STX6O43752 255 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 RC3H1Q5TC82 1133 aaKnown RBP17.12■□□□□ 0.33
CHD3-211ENST00000481999 ANKRD18AQ8IVF6 992 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 MAGEB6Q8N7X4 407 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 INCENPQ9NQS7 918 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 TMEM63CQ9P1W3 806 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.12■□□□□ 0.33
CHD3-211ENST00000481999 NPHP1O15259 732 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 HSP90B1P14625 803 aaKnown RBP17.12■□□□□ 0.33
CHD3-211ENST00000481999 RFC4P35249 363 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 APOBRQ0VD83 1088 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 FAM173BQ6P4H8 233 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 LRSAM1Q6UWE0 723 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 RAB11FIP4Q86YS3 637 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 RBSNQ9H1K0 784 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 ZNF831Q5JPB2 1677 aa17.12■□□□□ 0.33
CHD3-211ENST00000481999 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 VPS37CA5D8V6 355 aaPredicted RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 FGD1P98174 961 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 FERMT3Q86UX7 667 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 NAP1L2Q9ULW6 460 aaPredicted RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 MINPP1Q9UNW1 487 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 JAG2Q9Y219 1238 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 LAMB2P55268 1798 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 TCRBV5S4A2TA0A5A2 114 aa17.11■□□□□ 0.33
CHD3-211ENST00000481999 SF3B3Q15393 1217 aaKnown RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 CDC5LQ99459 802 aaKnown RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 NCOA5Q9HCD5 579 aaKnown RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 SH2B1Q9NRF2 756 aaPredicted RBP17.11■□□□□ 0.33
CHD3-211ENST00000481999 LY75O60449 1722 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 C4BP0C0L5 1744 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 GADD45BO75293 160 aaPredicted RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 APPP05067 770 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 FOSBP53539 338 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 KRT32Q14532 448 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 STK11IPQ8N1F8 1099 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 DDX11Q96FC9 970 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 NBPF3Q9H094 633 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 CNPY2Q9Y2B0 182 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 ZFYP08048 801 aaPredicted RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 CCT2P78371 535 aaKnown RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 NFIXQ14938 502 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 TRAPPC3LQ5T215 181 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 CDC37L1Q7L3B6 337 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 MIGA1Q8NAN2 632 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 ZNF512BQ96KM6 892 aaPredicted RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 ZSCAN31Q96LW9 406 aaPredicted RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 NAP1L5Q96NT1 182 aaPredicted RBP17.1■□□□□ 0.33
CHD3-211ENST00000481999 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.1■□□□□ 0.33
CHD3-211ENST00000481999 C4AP0C0L4 1744 aa17.1■□□□□ 0.33
CHD3-211ENST00000481999 COL1A1P02452 1464 aaPredicted RBP17.09■□□□□ 0.33
CHD3-211ENST00000481999 PRKAB2O43741 272 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 SCRN1Q12765 414 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 HS1BP3Q53T59 392 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 ADGRA1Q86SQ6 560 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 ZSCAN30Q86W11 494 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 SYAP1Q96A49 352 aaPredicted RBP17.09■□□□□ 0.33
CHD3-211ENST00000481999 ABCF2Q9UG63 623 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 SRCAPQ6ZRS2 3230 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 RTL9Q8NET4 1388 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 SYCE3A1L190 88 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 ZSCAN22P10073 491 aaPredicted RBP17.09■□□□□ 0.33
CHD3-211ENST00000481999 DHX32Q7L7V1 743 aaKnown RBP17.09■□□□□ 0.33
CHD3-211ENST00000481999 BCL11BQ9C0K0 894 aaPredicted RBP17.09■□□□□ 0.33
CHD3-211ENST00000481999 ARMT1Q9H993 441 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 TFCP2L1Q9NZI6 479 aa17.09■□□□□ 0.33
CHD3-211ENST00000481999 MTMR6Q9Y217 621 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms