RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 PRMT6Q96LA8 375 aaPredicted RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 MPHOSPH8Q99549 860 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 RNF208Q9H0X6 261 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 PHAXQ9H814 394 aaKnown RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 BSDC1Q9NW68 430 aaPredicted RBP9.94□□□□□ -0.82
USP54-213ENST00000481991 JAG2Q9Y219 1238 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 LEMD3Q9Y2U8 911 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 PPP2R3BQ9Y5P8 575 aa9.94□□□□□ -0.82
USP54-213ENST00000481991 KDM3BQ7LBC6 1761 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 COL4A1P02462 1669 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 ZNF609O15014 1411 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 ZNF804BA4D1E1 1349 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 TESPA1A2RU30 521 aaPredicted RBP9.93□□□□□ -0.82
USP54-213ENST00000481991 TFRCP02786 760 aaKnown RBP9.93□□□□□ -0.82
USP54-213ENST00000481991 HOXD10P28358 340 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 TMPOP42166 694 aaKnown RBP9.93□□□□□ -0.82
USP54-213ENST00000481991 MNX1P50219 401 aaPredicted RBP9.93□□□□□ -0.82
USP54-213ENST00000481991 FAM43AQ8N2R8 423 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 CCDC191Q8NCU4 936 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 BRI3BPQ8WY22 251 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 CSADQ9Y600 493 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 LRRC37AA6NMS7 1700 aa9.93□□□□□ -0.82
USP54-213ENST00000481991 MED23Q9ULK4 1368 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 UNCXA6NJT0 531 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 TCP10L2B9ZVM9 353 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 CHL1O00533 1208 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 SOX1O00570 391 aaPredicted RBP9.92□□□□□ -0.82
USP54-213ENST00000481991 CCL5P13501 91 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 KLRK1P26718 216 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 PSMC4P43686 418 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 CTSWP56202 376 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 MAP3K9P80192 1104 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 CCDC146Q8IYE0 955 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 DEFB123Q8N688 67 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 MS4A4AQ96JQ5 239 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 TRIM47Q96LD4 638 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 ANKRD2Q9GZV1 360 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 GREM2Q9H772 168 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 CD209Q9NNX6 404 aa9.92□□□□□ -0.82
USP54-213ENST00000481991 DDX60Q8IY21 1712 aaKnown RBP9.92□□□□□ -0.82
USP54-213ENST00000481991 ZBTB7BO15156 539 aaPredicted RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 PLIN1O60240 522 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 TLR2O60603 784 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 DDX58O95786 925 aaKnown RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 GRK4P32298 578 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 UBXN2AP68543 259 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 LACTBP83111 547 aaPredicted RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 HELBQ8NG08 1087 aaPredicted RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 TTLL11Q8NHH1 800 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 ZBED3Q96IU2 234 aaPredicted RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 TDRD3Q9H7E2 651 aaKnown RBP9.91□□□□□ -0.82
USP54-213ENST00000481991 CPA4Q9UI42 421 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 DLG5Q8TDM6 1919 aa9.91□□□□□ -0.82
USP54-213ENST00000481991 SPDYE2BA6NHP3 402 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 SNAP23O00161 211 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 SPDYE6P0CI01 402 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 CETPP11597 493 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 GJA8P48165 433 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 PRMT2P55345 433 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 Q7L0L9 218 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 SHISA4Q96DD7 197 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 TAOK2Q9UL54 1235 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 MAP3K2Q9Y2U5 619 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 RIPOR2Q9Y4F9 1068 aa9.9□□□□□ -0.82
USP54-213ENST00000481991 BTBD19C9JJ37 291 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 TAF5LO75529 589 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 FARP2O94887 1054 aaPredicted RBP9.89□□□□□ -0.83
USP54-213ENST00000481991 GNRH1P01148 92 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 GJB1P08034 283 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 TNFAIP1Q13829 316 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 VGLL4Q14135 290 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.89□□□□□ -0.83
USP54-213ENST00000481991 CERS5Q8N5B7 392 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 MTMR14Q8NCE2 650 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 METTL22Q9BUU2 404 aaPredicted RBP9.89□□□□□ -0.83
USP54-213ENST00000481991 ZNF70Q9UC06 446 aaPredicted RBP9.89□□□□□ -0.83
USP54-213ENST00000481991 SRRDQ9UH36 339 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 CENPFP49454 3210 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 CEP290O15078 2479 aa9.89□□□□□ -0.83
USP54-213ENST00000481991 HOXB7P09629 217 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 OSBPP22059 807 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 ITGA6P23229 1130 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 TNNI2P48788 182 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 CHRNDQ07001 517 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 NEXNQ0ZGT2 675 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 SNAPC2Q13487 334 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 ZNF804AQ7Z570 1209 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 U2AF1L4Q8WU68 220 aaKnown RBP9.88□□□□□ -0.83
USP54-213ENST00000481991 COL25A1Q9BXS0 654 aaPredicted RBP9.88□□□□□ -0.83
USP54-213ENST00000481991 TMEM39BQ9GZU3 492 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 CHMP3Q9Y3E7 222 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 SZT2Q5T011 3432 aa9.88□□□□□ -0.83
USP54-213ENST00000481991 AOX1Q06278 1338 aa9.87□□□□□ -0.83
USP54-213ENST00000481991 MYPNQ86TC9 1320 aa9.87□□□□□ -0.83
USP54-213ENST00000481991 COL1A1P02452 1464 aaPredicted RBP9.87□□□□□ -0.83
USP54-213ENST00000481991 ZKSCAN4Q969J2 545 aaPredicted RBP9.87□□□□□ -0.83
USP54-213ENST00000481991 UNC93B1Q9H1C4 597 aa9.87□□□□□ -0.83
USP54-213ENST00000481991 ZMYND8Q9ULU4 1186 aaPredicted RBP9.87□□□□□ -0.83
USP54-213ENST00000481991 TTF2Q9UNY4 1162 aaKnown RBP9.87□□□□□ -0.83
USP54-213ENST00000481991 RBBP6Q7Z6E9 1792 aaKnown RBP9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms