RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 FSTP19883 344 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 ZIC5Q96T25 663 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 CABP1Q9NZU7 370 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 TFIP11Q9UBB9 837 aaKnown RBP9.1□□□□□ -0.95
VPS50-215ENST00000480943 KIAA1024Q9UPX6 916 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 MAFBQ9Y5Q3 323 aaPredicted RBP9.1□□□□□ -0.95
VPS50-215ENST00000480943 USP3Q9Y6I4 520 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 MSH6P52701 1360 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 PIK3R4Q99570 1358 aa9.1□□□□□ -0.95
VPS50-215ENST00000480943 PTPRUQ92729 1446 aa9.09□□□□□ -0.95
VPS50-215ENST00000480943 CCDC102BQ68D86 513 aa9.09□□□□□ -0.95
VPS50-215ENST00000480943 OGFOD1Q8N543 542 aa9.09□□□□□ -0.95
VPS50-215ENST00000480943 WFDC12Q8WWY7 111 aa9.09□□□□□ -0.95
VPS50-215ENST00000480943 TBX22Q9Y458 520 aa9.09□□□□□ -0.95
VPS50-215ENST00000480943 PALM3A6NDB9 673 aaPredicted RBP9.08□□□□□ -0.96
VPS50-215ENST00000480943 KIAA1324LA8MWY0 1029 aaPredicted RBP9.08□□□□□ -0.96
VPS50-215ENST00000480943 ZNF295-AS1Q8N0V1 137 aa9.08□□□□□ -0.96
VPS50-215ENST00000480943 FMR1NBQ8N0W7 255 aaPredicted RBP9.08□□□□□ -0.96
VPS50-215ENST00000480943 LARGE2Q8N3Y3 721 aa9.08□□□□□ -0.96
VPS50-215ENST00000480943 SCHIP1Q9P0W5 487 aaPredicted RBP9.08□□□□□ -0.96
VPS50-215ENST00000480943 SETD5Q9C0A6 1442 aa9.07□□□□□ -0.96
VPS50-215ENST00000480943 ZBTB7BO15156 539 aaPredicted RBP9.07□□□□□ -0.96
VPS50-215ENST00000480943 PTCD1O75127 700 aaKnown RBP9.07□□□□□ -0.96
VPS50-215ENST00000480943 ZNF594Q96JF6 807 aaPredicted RBP9.07□□□□□ -0.96
VPS50-215ENST00000480943 CCDC144AA2RUR9 1427 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 FAM135BQ49AJ0 1406 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 COL16A1Q07092 1604 aaPredicted RBP9.06□□□□□ -0.96
VPS50-215ENST00000480943 EPHA4P54764 986 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 BICDL1Q6ZP65 573 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 ILDR2Q71H61 639 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 C14orf37Q86TY3 774 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 SLC9A9Q8IVB4 645 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 TNS4Q8IZW8 715 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 SIX5Q8N196 739 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 PPP1R12CQ9BZL4 782 aa9.06□□□□□ -0.96
VPS50-215ENST00000480943 RBM19Q9Y4C8 960 aaKnown RBP9.06□□□□□ -0.96
VPS50-215ENST00000480943 NCOA3Q9Y6Q9 1424 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 KNDC1Q76NI1 1749 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 METP08581 1390 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 GSC2O15499 205 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 RASA1P20936 1047 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 IREB2P48200 963 aaKnown RBP9.05□□□□□ -0.96
VPS50-215ENST00000480943 MPHOSPH9Q99550 1183 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 AMOTL2Q9Y2J4 779 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 PARP3Q9Y6F1 533 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 NHSL1Q5SYE7 1610 aa9.05□□□□□ -0.96
VPS50-215ENST00000480943 RAB3GAP2Q9H2M9 1393 aa9.04□□□□□ -0.96
VPS50-215ENST00000480943 LAMC1P11047 1609 aa9.04□□□□□ -0.96
VPS50-215ENST00000480943 AHDC1Q5TGY3 1603 aaPredicted RBP9.04□□□□□ -0.96
VPS50-215ENST00000480943 SHPRHQ149N8 1683 aa9.04□□□□□ -0.96
VPS50-215ENST00000480943 M0R2N6 131 aa9.03□□□□□ -0.96
VPS50-215ENST00000480943 TBCELQ5QJ74 424 aa9.03□□□□□ -0.96
VPS50-215ENST00000480943 ZDHHC1Q8WTX9 485 aa9.03□□□□□ -0.96
VPS50-215ENST00000480943 SPATA31E1Q6ZUB1 1445 aa9.03□□□□□ -0.96
VPS50-215ENST00000480943 TEAD4Q15561 434 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 LARP1Q6PKG0 1096 aaKnown RBP9.02□□□□□ -0.97
VPS50-215ENST00000480943 DTWD1Q8N5C7 304 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 L3MBTL2Q969R5 705 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 JPH1Q9HDC5 661 aaPredicted RBP9.02□□□□□ -0.97
VPS50-215ENST00000480943 SLAIN2Q9P270 581 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 ZNF232Q9UNY5 417 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 DCCP43146 1447 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 ADGRL3Q9HAR2 1447 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 RPGRIP1LQ68CZ1 1315 aa9.02□□□□□ -0.97
VPS50-215ENST00000480943 ASXL1Q8IXJ9 1541 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 SFI1A8K8P3 1242 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 NOS3P29474 1203 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 LMOD1P29536 600 aaPredicted RBP9.01□□□□□ -0.97
VPS50-215ENST00000480943 NOS2P35228 1153 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 TXLNAP40222 546 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 PTCH1Q13635 1447 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 RGL3Q3MIN7 710 aa9.01□□□□□ -0.97
VPS50-215ENST00000480943 TSEN2Q8NCE0 465 aaKnown RBP9.01□□□□□ -0.97
VPS50-215ENST00000480943 TSPAN10Q9H1Z9 355 aaPredicted RBP9.01□□□□□ -0.97
VPS50-215ENST00000480943 RGPD8O14715 1765 aaPredicted RBP9.01□□□□□ -0.97
VPS50-215ENST00000480943 MST1RQ04912 1400 aa9□□□□□ -0.97
VPS50-215ENST00000480943 SERTM1A2A2V5 107 aa9□□□□□ -0.97
VPS50-215ENST00000480943 DKK1O94907 266 aa9□□□□□ -0.97
VPS50-215ENST00000480943 ATF3P18847 181 aa9□□□□□ -0.97
VPS50-215ENST00000480943 GRIK1P39086 918 aa9□□□□□ -0.97
VPS50-215ENST00000480943 PSMA6P60900 246 aaKnown RBP9□□□□□ -0.97
VPS50-215ENST00000480943 C19orf44Q9H6X5 657 aa9□□□□□ -0.97
VPS50-215ENST00000480943 CHMP3Q9Y3E7 222 aa9□□□□□ -0.97
VPS50-215ENST00000480943 ACIN1Q9UKV3 1341 aaKnown RBP9□□□□□ -0.97
VPS50-215ENST00000480943 SEC13P55735 322 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 CRTC2Q53ET0 693 aaPredicted RBP8.99□□□□□ -0.97
VPS50-215ENST00000480943 INTS5Q6P9B9 1019 aaKnown RBP8.99□□□□□ -0.97
VPS50-215ENST00000480943 KRTAP17-1Q9BYP8 105 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 NEUROD4Q9HD90 331 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 FMN2Q9NZ56 1722 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 ADGRF5Q8IZF2 1346 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 CDC42BPGQ6DT37 1551 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 ROBO2Q9HCK4 1378 aa8.99□□□□□ -0.97
VPS50-215ENST00000480943 PIK3C2GO75747 1445 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 PRAG1Q86YV5 1406 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 MYOM2P54296 1465 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 USP17L15C9J2P7 530 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 USP17L10C9JJH3 530 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 USP17L13C9JLJ4 530 aa8.98□□□□□ -0.97
VPS50-215ENST00000480943 USP17L12C9JPN9 530 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms